Strain Fitness in Variovorax sp. SCN45 around GFF5482

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
109,755	+		GFF5480	0.83	-0.3
109,755	+		GFF5480	0.83	+0.3
109,755	+		GFF5480	0.83	-1.8
109,755	+		GFF5480	0.83	-0.3
109,755	+		GFF5480	0.83	+0.7
109,755	+		GFF5480	0.83	+0.4
109,755	+		GFF5480	0.83	+0.2
109,755	+		GFF5480	0.83	-0.4
109,756	-		GFF5480	0.83	+1.1
109,756	-		GFF5480	0.83	+2.2
109,756	-		GFF5480	0.83	-1.2
109,756	-		GFF5480	0.83	+0.0
109,756	-		GFF5480	0.83	-0.5
109,756	-		GFF5480	0.83	-0.9
109,756	-		GFF5480	0.83	-0.1
109,756	-		GFF5480	0.83	+0.0
109,756	-		GFF5480	0.83	-0.7
109,756	-		GFF5480	0.83	-0.4
109,756	-		GFF5480	0.83	+0.7
109,756	-		GFF5480	0.83	-1.1
109,756	-		GFF5480	0.83	-0.3
109,821	+				+2.6
109,822	-				-0.8
109,893	+				-0.9
109,894	-				-1.3
109,894	-				-0.7
110,152	+		GFF5481	0.64	-0.2
110,152	+		GFF5481	0.64	+0.9
110,152	+		GFF5481	0.64	-0.9
110,152	+		GFF5481	0.64	+2.4
110,152	+		GFF5481	0.64	-1.0
110,152	+		GFF5481	0.64	-0.0
110,152	+		GFF5481	0.64	+0.5
110,152	+		GFF5481	0.64	-2.7
110,152	+		GFF5481	0.64	-0.7
110,152	+		GFF5481	0.64	-1.0
110,152	+		GFF5481	0.64	+1.0
110,152	+		GFF5481	0.64	-0.2
110,152	+		GFF5481	0.64	+0.4
110,152	+		GFF5481	0.64	-0.2
110,153	-		GFF5481	0.64	+0.1
110,153	-		GFF5481	0.64	-0.0
110,153	-		GFF5481	0.64	+0.9
110,153	-		GFF5481	0.64	-1.6
110,153	-		GFF5481	0.64	+0.7
110,153	-		GFF5481	0.64	-0.1
110,153	-		GFF5481	0.64	-0.5
110,153	-		GFF5481	0.64	-0.6
110,153	-		GFF5481	0.64	+0.1
110,153	-		GFF5481	0.64	-1.2
110,153	-		GFF5481	0.64	+0.2
110,153	-		GFF5481	0.64	-0.9
110,153	-		GFF5481	0.64	+1.9
110,153	-		GFF5481	0.64	+0.7
110,153	-		GFF5481	0.64	-0.1
110,197	+		GFF5481	0.77	-1.2
110,197	+		GFF5481	0.77	+0.7
110,197	+		GFF5481	0.77	-0.3
110,197	+		GFF5481	0.77	-0.2
110,197	+		GFF5481	0.77	+0.2
110,197	+		GFF5481	0.77	-0.8
110,197	+		GFF5481	0.77	+1.2
110,197	+		GFF5481	0.77	-1.5
110,197	+		GFF5481	0.77	-0.3
110,197	+		GFF5481	0.77	-0.9
110,197	+		GFF5481	0.77	-0.6
110,197	+		GFF5481	0.77	-1.0
110,197	+		GFF5481	0.77	+0.2
110,197	+		GFF5481	0.77	-0.5
110,197	+		GFF5481	0.77	-1.1
110,198	-		GFF5481	0.77	-1.7
110,198	-		GFF5481	0.77	+0.5
110,198	-		GFF5481	0.77	+2.0
110,198	-		GFF5481	0.77	-0.3
110,198	-		GFF5481	0.77	-1.1
110,198	-		GFF5481	0.77	+0.3
110,198	-		GFF5481	0.77	-0.3
110,198	-		GFF5481	0.77	-0.5
110,200	+		GFF5481	0.78	-0.9
110,200	+		GFF5481	0.78	-0.3
110,200	+		GFF5481	0.78	-0.3
110,200	+		GFF5481	0.78	+0.2
110,200	+		GFF5481	0.78	-0.6
110,200	+		GFF5481	0.78	-0.3
110,200	+		GFF5481	0.78	-0.4
110,200	+		GFF5481	0.78	+0.4
110,200	+		GFF5481	0.78	-0.3
110,200	+		GFF5481	0.78	-0.8
110,200	+		GFF5481	0.78	-0.8
110,200	+		GFF5481	0.78	-0.6
110,200	+		GFF5481	0.78	-0.4
110,200	+		GFF5481	0.78	-0.5
110,200	+		GFF5481	0.78	+1.7
110,200	+		GFF5481	0.78	-1.1
110,200	+		GFF5481	0.78	-1.1
110,200	+		GFF5481	0.78	-0.5
110,200	+		GFF5481	0.78	-0.2
110,200	+		GFF5481	0.78	-1.1
110,200	+		GFF5481	0.78	-0.8
110,200	+		GFF5481	0.78	-1.3
110,200	+		GFF5481	0.78	-0.4
110,200	+		GFF5481	0.78	+0.2
110,200	+		GFF5481	0.78	-0.3
110,201	-		GFF5481	0.78	-0.1
110,201	-		GFF5481	0.78	-1.3
110,201	-		GFF5481	0.78	-0.0
110,201	-		GFF5481	0.78	-0.7
110,201	-		GFF5481	0.78	-0.4
110,201	-		GFF5481	0.78	-0.1
110,201	-		GFF5481	0.78	+0.4
110,201	-		GFF5481	0.78	-1.9
110,201	-		GFF5481	0.78	-0.3
110,201	-		GFF5481	0.78	+0.7
110,201	-		GFF5481	0.78	-1.1
110,201	-		GFF5481	0.78	+2.5
110,201	-		GFF5481	0.78	+0.2
110,201	-		GFF5481	0.78	-0.6
110,201	-		GFF5481	0.78	+0.2
110,201	-		GFF5481	0.78	-1.2
110,201	-		GFF5481	0.78	+0.4
110,201	-		GFF5481	0.78	-0.3
110,201	-		GFF5481	0.78	-0.3
110,201	-		GFF5481	0.78	-1.0
110,201	-		GFF5481	0.78	-0.4
110,201	-		GFF5481	0.78	-0.2
110,201	-		GFF5481	0.78	-1.1
110,267	-				+0.7
110,327	+				-0.1
110,328	-				+0.4
110,560	+		GFF5482	0.37	-0.4
110,560	+		GFF5482	0.37	+0.1
110,560	+		GFF5482	0.37	-0.6
110,560	+		GFF5482	0.37	+0.1
110,560	+		GFF5482	0.37	-0.2
110,560	+		GFF5482	0.37	-0.2
110,560	+		GFF5482	0.37	-0.5
110,560	+		GFF5482	0.37	-0.7
110,560	+		GFF5482	0.37	-0.8
110,560	+		GFF5482	0.37	+0.1
110,560	+		GFF5482	0.37	+0.3
110,561	-		GFF5482	0.38	-1.1
110,561	-		GFF5482	0.38	-0.0
110,561	-		GFF5482	0.38	+0.4
110,561	-		GFF5482	0.38	-2.6
110,561	-		GFF5482	0.38	+1.2
110,561	-		GFF5482	0.38	-0.6
110,561	-		GFF5482	0.38	-0.3
110,561	-		GFF5482	0.38	+0.2
110,561	-		GFF5482	0.38	+0.2
110,561	-		GFF5482	0.38	+0.1
110,561	-		GFF5482	0.38	-0.3
110,561	-		GFF5482	0.38	+0.3
110,561	-		GFF5482	0.38	-0.1
110,701	+		GFF5482	0.67	+0.1
110,701	+		GFF5482	0.67	+0.1
110,701	+		GFF5482	0.67	-0.2
110,701	+		GFF5482	0.67	+0.1
110,701	+		GFF5482	0.67	-0.1
110,702	-		GFF5482	0.67	+0.2
110,702	-		GFF5482	0.67	+0.7
110,702	-		GFF5482	0.67	+0.1
110,924	+				+0.7
110,925	-				+0.6
110,925	-				+0.7
110,941	+				+1.5
110,941	+				-0.0
110,941	+				-1.8
110,941	+				-0.1
110,941	+				+0.2
110,941	+				+1.4
110,941	+				-0.0
110,941	+				-0.1
110,941	+				-0.5
110,941	+				-1.6
110,941	+				+1.4
110,941	+				-0.1
110,941	+				-0.7
110,941	+				+0.4
110,941	+				-1.3
110,941	+				-2.4
110,941	+				+0.1
110,941	+				+0.1
110,941	+				+1.2
110,941	+				-1.0
110,941	+				-0.2
110,941	+				-0.5
110,941	+				+0.4
110,941	+				-0.7
110,942	-				-1.3
110,942	-				+0.0
110,942	-				+0.4
110,942	-				-0.1
110,942	-				-1.3
110,942	-				-1.7
110,942	-				-0.2
110,942	-				+0.8
110,942	-				+0.2
110,942	-				-0.9
110,942	-				+0.0
110,942	-				-1.2
110,942	-				+0.7
110,942	-				-1.7
110,942	-				-0.5
110,942	-				-2.1
110,942	-				+0.5
110,942	-				-0.1
110,992	+				-0.1
110,992	+				+0.1
110,992	+				-0.1
110,992	+				-0.2
110,992	+				-0.5
110,992	+				-0.1
110,992	+				+0.5
110,992	+				-0.2
110,992	+				+0.2
110,993	-				+3.0
110,993	-				-0.6
110,993	-				-0.1
110,993	-				-0.2
110,993	-				+0.1
110,993	-				-1.8
110,993	-				-0.4
110,993	-				-0.6
111,021	+				-2.1
111,021	+				-0.1
111,021	+				-0.4
111,021	+				-0.1
111,022	-				-0.2
111,022	-				-0.2
111,022	-				-0.5
111,074	+				+0.3
111,075	-				+0.5
111,075	-				+1.2
111,075	-				-1.7
111,075	-				-0.3
111,075	-				+0.4
111,075	-				+0.0
111,075	-				+0.2
111,075	-				-0.6
111,100	+				-0.9
111,100	+				+0.4
111,100	+				+0.5
111,100	+				+0.5
111,100	+				+2.2
111,100	+				-0.9
111,100	+				-0.2
111,100	+				+0.8
111,100	+				+0.1
111,100	+				-1.0
111,100	+				+0.0
111,100	+				-1.6
111,100	+				+2.2
111,100	+				-0.2
111,100	+				+0.0
111,101	-				-1.0
111,101	-				-0.4
111,101	-				-0.4
111,101	-				+0.4
111,101	-				-0.7
111,101	-				+0.4
111,101	-				-1.3
111,101	-				-0.8
111,101	-				+1.7
111,101	-				-2.0
111,101	-				+0.4
111,112	+				-0.1
111,112	+				-1.7
111,112	+				+0.2
111,113	-				+0.5
111,221	-				-0.3
111,221	-				+0.2
111,244	+				+0.2
111,245	-				+0.1
111,245	-				+0.0
111,245	-				+0.9
111,410	-		GFF5483	0.10	+1.2
111,481	+		GFF5483	0.12	-0.8
111,482	-		GFF5483	0.12	-0.2
111,482	-		GFF5483	0.12	-0.2
111,482	-		GFF5483	0.12	-1.3
111,617	+		GFF5483	0.16	+0.4
111,617	+		GFF5483	0.16	+1.2
111,617	+		GFF5483	0.16	+0.9
111,617	+		GFF5483	0.16	+0.2
111,617	+		GFF5483	0.16	+1.2
111,617	+		GFF5483	0.16	+0.4
111,617	+		GFF5483	0.16	-0.5
111,617	+		GFF5483	0.16	+0.1
111,617	+		GFF5483	0.16	+0.3
111,617	+		GFF5483	0.16	+0.7
111,617	+		GFF5483	0.16	+1.0
111,617	+		GFF5483	0.16	-2.1
111,617	+		GFF5483	0.16	-0.2
111,617	+		GFF5483	0.16	+0.0
111,617	+		GFF5483	0.16	+0.5
111,617	+		GFF5483	0.16	+0.3
111,617	+		GFF5483	0.16	+0.4
111,617	+		GFF5483	0.16	+0.4
111,617	+		GFF5483	0.16	+0.3
111,617	+		GFF5483	0.16	-2.1
111,617	+		GFF5483	0.16	-0.4
111,617	+		GFF5483	0.16	-1.1
111,618	-		GFF5483	0.16	+1.1
111,618	-		GFF5483	0.16	+1.8
111,618	-		GFF5483	0.16	+1.7
111,618	-		GFF5483	0.16	+0.0
111,618	-		GFF5483	0.16	-1.4
111,618	-		GFF5483	0.16	+0.2
111,618	-		GFF5483	0.16	-0.0
111,618	-		GFF5483	0.16	+1.1
111,618	-		GFF5483	0.16	+0.9
111,618	-		GFF5483	0.16	+0.2
111,618	-		GFF5483	0.16	+0.2
111,618	-		GFF5483	0.16	-0.4
111,826	+		GFF5483	0.22	-0.2
111,826	+		GFF5483	0.22	-0.7
111,826	+		GFF5483	0.22	+0.4
111,826	+		GFF5483	0.22	+0.5
111,826	+		GFF5483	0.22	-1.1
111,826	+		GFF5483	0.22	+2.8
111,826	+		GFF5483	0.22	+1.2
111,826	+		GFF5483	0.22	-0.5
111,826	+		GFF5483	0.22	-0.2
111,826	+		GFF5483	0.22	-0.6
111,826	+		GFF5483	0.22	+0.3
111,826	+		GFF5483	0.22	-0.8
111,826	+		GFF5483	0.22	+0.7
111,826	+		GFF5483	0.22	-0.0
111,826	+		GFF5483	0.22	-2.4
111,826	+		GFF5483	0.22	-0.1
111,826	+		GFF5483	0.22	-1.7
111,826	+		GFF5483	0.22	+0.9
111,826	+		GFF5483	0.22	-0.3
111,826	+		GFF5483	0.22	-0.9
111,826	+		GFF5483	0.22	+0.3
111,826	+		GFF5483	0.22	-0.7
111,826	+		GFF5483	0.22	-0.5
111,826	+		GFF5483	0.22	-0.4
111,826	+		GFF5483	0.22	+1.2
111,826	+		GFF5483	0.22	-0.9
111,827	-		GFF5483	0.22	-1.0
111,827	-		GFF5483	0.22	+0.7
111,827	-		GFF5483	0.22	+1.7
111,827	-		GFF5483	0.22	+0.2
111,827	-		GFF5483	0.22	-0.9
111,827	-		GFF5483	0.22	-0.2
111,827	-		GFF5483	0.22	-1.3
111,827	-		GFF5483	0.22	+0.5
111,827	-		GFF5483	0.22	+0.1
111,827	-		GFF5483	0.22	-0.2
111,827	-		GFF5483	0.22	-1.2
111,827	-		GFF5483	0.22	+0.7
111,827	-		GFF5483	0.22	-0.2
111,827	-		GFF5483	0.22	+2.0
111,827	-		GFF5483	0.22	-0.1
111,827	-		GFF5483	0.22	-1.1
111,827	-		GFF5483	0.22	+1.2
111,827	-		GFF5483	0.22	-0.1
111,827	-		GFF5483	0.22	-0.8
111,827	-		GFF5483	0.22	-0.2
111,827	-		GFF5483	0.22	-0.8
111,827	-		GFF5483	0.22	-1.2
111,827	-		GFF5483	0.22	-1.7
111,827	-		GFF5483	0.22	-0.6
111,827	-		GFF5483	0.22	-0.8
111,827	-		GFF5483	0.22	-0.3
111,835	+		GFF5483	0.22	-0.2
111,835	+		GFF5483	0.22	-0.8
111,835	+		GFF5483	0.22	-0.1
111,836	-		GFF5483	0.22	-0.6
111,836	-		GFF5483	0.22	-0.2
111,836	-		GFF5483	0.22	+0.5
111,836	-		GFF5483	0.22	+1.2
111,836	-		GFF5483	0.22	+0.3
111,850	+		GFF5483	0.23	-0.0
111,850	+		GFF5483	0.23	-0.6
111,850	+		GFF5483	0.23	-0.4
111,850	+		GFF5483	0.23	-0.1
111,850	+		GFF5483	0.23	+0.9
111,850	+		GFF5483	0.23	+0.0
111,850	+		GFF5483	0.23	+0.4
111,850	+		GFF5483	0.23	+1.8
111,850	+		GFF5483	0.23	+0.5
111,850	+		GFF5483	0.23	-0.5
111,850	+		GFF5483	0.23	-0.0
111,850	+		GFF5483	0.23	+0.6
111,850	+		GFF5483	0.23	-0.5
111,851	-		GFF5483	0.23	+0.0
111,851	-		GFF5483	0.23	+0.1
111,851	-		GFF5483	0.23	+1.9
111,851	-		GFF5483	0.23	+1.4
111,851	-		GFF5483	0.23	-0.0
111,851	-		GFF5483	0.23	+0.1
111,851	-		GFF5483	0.23	-0.8
111,851	-		GFF5483	0.23	-0.4