Strain Fitness in Variovorax sp. SCN45 around GFF5471

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5469 and GFF5470 are separated by 7 nucleotidesGFF5470 and GFF5471 are separated by 11 nucleotidesGFF5471 and GFF5472 are separated by 11 nucleotidesGFF5472 and GFF5473 are separated by 29 nucleotides GFF5469 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 99,287 to 100,141 GFF5469 GFF5470 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 100,149 to 100,952 GFF5470 GFF5471 - Creatinine amidohydrolase (EC 3.5.2.10), at 100,964 to 101,785 GFF5471 GFF5472 - SEED: DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 101,797 to 101,910 GFF5472 GFF5473 - hypothetical protein, at 101,940 to 104,396 GFF5473 Position (kb) 100 101 102Strain fitness (log2 ratio) -2 -1 0 1 2 3at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 100.219 kb on + strandat 100.219 kb on + strandat 100.220 kb on - strandat 100.256 kb on - strand, within GFF5470at 100.330 kb on + strand, within GFF5470at 100.330 kb on + strand, within GFF5470at 100.330 kb on + strand, within GFF5470at 100.331 kb on - strand, within GFF5470at 100.331 kb on - strand, within GFF5470at 100.331 kb on - strand, within GFF5470at 100.331 kb on - strand, within GFF5470at 100.342 kb on + strand, within GFF5470at 100.342 kb on + strand, within GFF5470at 100.343 kb on - strand, within GFF5470at 100.343 kb on - strand, within GFF5470at 100.537 kb on + strand, within GFF5470at 100.538 kb on - strand, within GFF5470at 100.538 kb on - strand, within GFF5470at 100.965 kb on + strandat 100.966 kb on - strandat 101.232 kb on + strand, within GFF5471at 101.232 kb on + strand, within GFF5471at 101.233 kb on - strand, within GFF5471at 101.233 kb on - strand, within GFF5471at 101.337 kb on + strand, within GFF5471at 101.430 kb on + strand, within GFF5471at 101.430 kb on + strand, within GFF5471at 101.430 kb on + strand, within GFF5471at 101.430 kb on + strand, within GFF5471at 101.430 kb on + strand, within GFF5471at 101.430 kb on + strand, within GFF5471at 101.430 kb on + strand, within GFF5471at 101.431 kb on - strand, within GFF5471at 101.431 kb on - strand, within GFF5471at 101.431 kb on - strand, within GFF5471at 101.431 kb on - strand, within GFF5471at 101.431 kb on - strand, within GFF5471at 101.431 kb on - strand, within GFF5471at 101.431 kb on - strand, within GFF5471at 101.431 kb on - strand, within GFF5471at 101.821 kb on + strand, within GFF5472at 101.822 kb on - strand, within GFF5472at 101.827 kb on - strand, within GFF5472at 101.855 kb on + strand, within GFF5472at 101.855 kb on + strand, within GFF5472at 101.855 kb on + strand, within GFF5472at 101.856 kb on - strand, within GFF5472at 101.860 kb on - strand, within GFF5472at 101.885 kb on + strand, within GFF5472at 101.885 kb on + strand, within GFF5472at 101.885 kb on + strand, within GFF5472at 101.885 kb on + strand, within GFF5472at 101.885 kb on + strand, within GFF5472at 101.886 kb on - strand, within GFF5472at 101.886 kb on - strand, within GFF5472at 101.886 kb on - strand, within GFF5472at 101.886 kb on - strand, within GFF5472at 101.941 kb on + strandat 101.942 kb on - strandat 101.942 kb on - strandat 101.942 kb on - strandat 102.008 kb on + strandat 102.008 kb on + strandat 102.008 kb on + strandat 102.008 kb on + strandat 102.008 kb on + strandat 102.008 kb on + strandat 102.009 kb on - strandat 102.009 kb on - strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.010 kb on + strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.011 kb on - strandat 102.172 kb on + strandat 102.172 kb on + strandat 102.172 kb on - strandat 102.173 kb on - strandat 102.173 kb on - strandat 102.173 kb on - strandat 102.472 kb on + strand, within GFF5473at 102.472 kb on + strand, within GFF5473at 102.473 kb on - strand, within GFF5473at 102.473 kb on - strand, within GFF5473at 102.502 kb on + strand, within GFF5473at 102.502 kb on + strand, within GFF5473at 102.503 kb on - strand, within GFF5473at 102.517 kb on + strand, within GFF5473at 102.517 kb on + strand, within GFF5473at 102.518 kb on - strand, within GFF5473at 102.518 kb on - strand, within GFF5473at 102.598 kb on + strand, within GFF5473at 102.598 kb on + strand, within GFF5473at 102.599 kb on - strand, within GFF5473at 102.599 kb on - strand, within GFF5473

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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99,972 + GFF5469 0.80 +0.3
99,972 + GFF5469 0.80 -0.4
99,972 + GFF5469 0.80 +0.9
99,972 + GFF5469 0.80 -0.3
99,972 + GFF5469 0.80 -1.8
99,972 + GFF5469 0.80 -0.7
99,973 - GFF5469 0.80 -0.8
99,973 - GFF5469 0.80 -0.1
99,973 - GFF5469 0.80 -0.5
99,973 - GFF5469 0.80 -0.2
99,973 - GFF5469 0.80 -0.3
99,973 - GFF5469 0.80 -0.4
99,973 - GFF5469 0.80 -0.9
99,973 - GFF5469 0.80 -0.6
99,973 - GFF5469 0.80 -0.5
99,973 - GFF5469 0.80 -1.9
99,973 - GFF5469 0.80 -0.0
99,973 - GFF5469 0.80 +1.2
100,219 + -1.1
100,219 + -1.3
100,220 - -0.8
100,256 - GFF5470 0.13 -1.2
100,330 + GFF5470 0.23 -0.0
100,330 + GFF5470 0.23 +0.2
100,330 + GFF5470 0.23 -0.6
100,331 - GFF5470 0.23 -1.3
100,331 - GFF5470 0.23 -0.1
100,331 - GFF5470 0.23 -1.1
100,331 - GFF5470 0.23 +0.5
100,342 + GFF5470 0.24 +0.2
100,342 + GFF5470 0.24 +0.4
100,343 - GFF5470 0.24 -0.5
100,343 - GFF5470 0.24 -1.1
100,537 + GFF5470 0.48 -0.7
100,538 - GFF5470 0.48 -0.3
100,538 - GFF5470 0.48 +1.2
100,965 + -0.1
100,966 - -0.1
101,232 + GFF5471 0.33 -0.3
101,232 + GFF5471 0.33 -0.9
101,233 - GFF5471 0.33 -0.2
101,233 - GFF5471 0.33 +0.8
101,337 + GFF5471 0.45 -0.4
101,430 + GFF5471 0.57 -0.5
101,430 + GFF5471 0.57 +0.5
101,430 + GFF5471 0.57 +1.1
101,430 + GFF5471 0.57 -0.2
101,430 + GFF5471 0.57 +0.2
101,430 + GFF5471 0.57 +0.0
101,430 + GFF5471 0.57 -0.1
101,431 - GFF5471 0.57 +0.4
101,431 - GFF5471 0.57 +0.1
101,431 - GFF5471 0.57 -0.9
101,431 - GFF5471 0.57 -0.0
101,431 - GFF5471 0.57 +0.4
101,431 - GFF5471 0.57 +2.0
101,431 - GFF5471 0.57 -0.3
101,431 - GFF5471 0.57 +0.1
101,821 + GFF5472 0.21 -0.2
101,822 - GFF5472 0.22 -0.0
101,827 - GFF5472 0.26 -0.7
101,855 + GFF5472 0.51 -0.8
101,855 + GFF5472 0.51 +0.7
101,855 + GFF5472 0.51 -0.3
101,856 - GFF5472 0.52 -0.7
101,860 - GFF5472 0.55 -0.9
101,885 + GFF5472 0.77 +1.0
101,885 + GFF5472 0.77 +0.2
101,885 + GFF5472 0.77 -0.2
101,885 + GFF5472 0.77 -0.5
101,885 + GFF5472 0.77 +1.8
101,886 - GFF5472 0.78 -0.6
101,886 - GFF5472 0.78 +0.4
101,886 - GFF5472 0.78 -0.6
101,886 - GFF5472 0.78 -0.6
101,941 + -0.5
101,942 - +0.7
101,942 - +0.2
101,942 - -0.5
102,008 + -0.0
102,008 + -0.2
102,008 + -0.1
102,008 + -0.1
102,008 + -1.0
102,008 + -0.4
102,009 - -0.6
102,009 - -1.1
102,010 + +0.1
102,010 + -0.2
102,010 + +1.2
102,010 + -0.1
102,010 + -1.1
102,010 + +0.2
102,010 + -0.9
102,010 + -1.9
102,010 + -0.2
102,010 + -2.5
102,010 + -1.2
102,010 + -0.6
102,010 + -1.0
102,010 + -0.7
102,010 + -0.6
102,010 + +2.8
102,010 + -0.2
102,010 + -0.2
102,010 + -1.6
102,010 + -0.1
102,010 + +0.9
102,010 + -0.3
102,010 + -0.9
102,011 - -0.9
102,011 - -0.4
102,011 - -0.0
102,011 - +0.2
102,011 - -0.8
102,011 - -0.4
102,011 - +0.8
102,011 - -0.1
102,011 - +1.1
102,011 - -1.3
102,011 - +1.3
102,011 - +0.3
102,011 - -0.2
102,011 - -0.8
102,011 - -0.6
102,172 + -1.1
102,172 + +0.1
102,172 - -0.7
102,173 - -1.1
102,173 - -0.9
102,173 - +0.7
102,472 + GFF5473 0.22 -0.5
102,472 + GFF5473 0.22 -0.4
102,473 - GFF5473 0.22 -0.6
102,473 - GFF5473 0.22 -0.7
102,502 + GFF5473 0.23 -0.3
102,502 + GFF5473 0.23 -0.2
102,503 - GFF5473 0.23 +0.1
102,517 + GFF5473 0.23 -0.1
102,517 + GFF5473 0.23 -0.4
102,518 - GFF5473 0.24 -0.4
102,518 - GFF5473 0.24 -0.2
102,598 + GFF5473 0.27 +0.2
102,598 + GFF5473 0.27 -0.5
102,599 - GFF5473 0.27 -0.3
102,599 - GFF5473 0.27 -2.1

Or see this region's nucleotide sequence