Strain Fitness in Variovorax sp. SCN45 around GFF5467

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5465 and GFF5466 are separated by 45 nucleotidesGFF5466 and GFF5467 are separated by 140 nucleotidesGFF5467 and GFF5468 are separated by 85 nucleotides GFF5465 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 94,916 to 95,884 GFF5465 GFF5466 - NAD(P)H oxidoreductase YrkL @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2, at 95,930 to 96,520 GFF5466 GFF5467 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 96,661 to 97,689 GFF5467 GFF5468 - FAD/FMN-containing dehydrogenase, at 97,775 to 99,157 GFF5468 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1 2 3at 95.682 kb on + strand, within GFF5465at 95.683 kb on - strand, within GFF5465at 95.721 kb on + strand, within GFF5465at 95.775 kb on + strand, within GFF5465at 95.775 kb on + strand, within GFF5465at 95.775 kb on + strand, within GFF5465at 95.776 kb on - strand, within GFF5465at 95.923 kb on + strandat 95.923 kb on + strandat 95.923 kb on + strandat 95.923 kb on + strandat 95.923 kb on + strandat 95.924 kb on - strandat 95.924 kb on - strandat 95.924 kb on - strandat 95.924 kb on - strandat 95.924 kb on - strandat 95.924 kb on - strandat 95.927 kb on + strandat 95.928 kb on - strandat 95.928 kb on - strandat 95.930 kb on + strandat 96.274 kb on - strand, within GFF5466at 96.274 kb on - strand, within GFF5466at 96.274 kb on - strand, within GFF5466at 96.357 kb on + strand, within GFF5466at 96.357 kb on + strand, within GFF5466at 96.406 kb on - strand, within GFF5466at 96.406 kb on - strand, within GFF5466at 96.462 kb on + strandat 96.590 kb on - strandat 96.590 kb on - strandat 96.662 kb on + strandat 96.662 kb on + strandat 96.662 kb on + strandat 96.662 kb on + strandat 96.662 kb on + strandat 96.662 kb on + strandat 96.662 kb on + strandat 96.663 kb on - strandat 96.758 kb on + strandat 96.758 kb on + strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.785 kb on + strand, within GFF5467at 96.786 kb on - strand, within GFF5467at 96.957 kb on - strand, within GFF5467at 96.957 kb on - strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 97.058 kb on + strand, within GFF5467at 97.059 kb on - strand, within GFF5467at 97.145 kb on + strand, within GFF5467at 97.145 kb on + strand, within GFF5467at 97.145 kb on + strand, within GFF5467at 97.146 kb on - strand, within GFF5467at 97.146 kb on - strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.200 kb on - strand, within GFF5467at 97.200 kb on - strand, within GFF5467at 97.521 kb on - strand, within GFF5467at 97.521 kb on - strand, within GFF5467at 97.521 kb on - strand, within GFF5467at 97.521 kb on - strand, within GFF5467at 97.521 kb on - strand, within GFF5467at 97.521 kb on - strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.529 kb on + strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.530 kb on - strand, within GFF5467at 97.554 kb on - strand, within GFF5467at 97.554 kb on - strand, within GFF5467at 97.721 kb on + strandat 97.722 kb on - strandat 97.743 kb on - strandat 97.968 kb on + strand, within GFF5468at 97.968 kb on + strand, within GFF5468at 97.969 kb on - strand, within GFF5468at 97.969 kb on - strand, within GFF5468at 98.118 kb on + strand, within GFF5468at 98.118 kb on + strand, within GFF5468at 98.118 kb on + strand, within GFF5468at 98.118 kb on + strand, within GFF5468at 98.118 kb on + strand, within GFF5468at 98.119 kb on - strand, within GFF5468at 98.119 kb on - strand, within GFF5468at 98.119 kb on - strand, within GFF5468at 98.119 kb on - strand, within GFF5468at 98.119 kb on - strand, within GFF5468at 98.119 kb on - strand, within GFF5468at 98.133 kb on + strand, within GFF5468at 98.133 kb on + strand, within GFF5468at 98.134 kb on - strand, within GFF5468at 98.134 kb on - strand, within GFF5468at 98.134 kb on - strand, within GFF5468at 98.134 kb on - strand, within GFF5468at 98.193 kb on + strand, within GFF5468at 98.193 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.361 kb on + strand, within GFF5468at 98.361 kb on + strand, within GFF5468at 98.451 kb on + strand, within GFF5468at 98.538 kb on + strand, within GFF5468

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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95,682 + GFF5465 0.79 +0.3
95,683 - GFF5465 0.79 -0.2
95,721 + GFF5465 0.83 -0.2
95,775 + GFF5465 0.89 +0.9
95,775 + GFF5465 0.89 +1.0
95,775 + GFF5465 0.89 -0.1
95,776 - GFF5465 0.89 +0.1
95,923 + -1.1
95,923 + -1.1
95,923 + -0.8
95,923 + +0.9
95,923 + +0.1
95,924 - -0.4
95,924 - -1.0
95,924 - -0.3
95,924 - +0.7
95,924 - -0.4
95,924 - -0.8
95,927 + -0.3
95,928 - -0.7
95,928 - +0.4
95,930 + -1.3
96,274 - GFF5466 0.58 -1.1
96,274 - GFF5466 0.58 -0.5
96,274 - GFF5466 0.58 +0.2
96,357 + GFF5466 0.72 +0.0
96,357 + GFF5466 0.72 +0.2
96,406 - GFF5466 0.81 -0.3
96,406 - GFF5466 0.81 -0.3
96,462 + -0.4
96,590 - +1.0
96,590 - +1.9
96,662 + +1.4
96,662 + +0.3
96,662 + +0.1
96,662 + -1.2
96,662 + +0.6
96,662 + -0.3
96,662 + +0.6
96,663 - -0.2
96,758 + -0.6
96,758 + -1.0
96,759 - -1.9
96,759 - -0.1
96,759 - +0.0
96,759 - -0.6
96,759 - -0.0
96,759 - +0.3
96,759 - +0.2
96,759 - -0.5
96,785 + GFF5467 0.12 +0.2
96,786 - GFF5467 0.12 -1.2
96,957 - GFF5467 0.29 -0.5
96,957 - GFF5467 0.29 -0.0
96,962 + GFF5467 0.29 -0.8
96,962 + GFF5467 0.29 +0.7
96,962 + GFF5467 0.29 -0.7
96,962 + GFF5467 0.29 +0.1
96,962 + GFF5467 0.29 -0.3
96,963 - GFF5467 0.29 -0.8
96,963 - GFF5467 0.29 +0.0
96,963 - GFF5467 0.29 -0.2
96,963 - GFF5467 0.29 -1.1
96,963 - GFF5467 0.29 +0.5
96,963 - GFF5467 0.29 -1.2
96,963 - GFF5467 0.29 -0.2
96,963 - GFF5467 0.29 +1.2
97,058 + GFF5467 0.39 -1.6
97,059 - GFF5467 0.39 -0.5
97,145 + GFF5467 0.47 -0.4
97,145 + GFF5467 0.47 -0.5
97,145 + GFF5467 0.47 +1.2
97,146 - GFF5467 0.47 -0.3
97,146 - GFF5467 0.47 +0.1
97,199 + GFF5467 0.52 -0.3
97,199 + GFF5467 0.52 -0.6
97,199 + GFF5467 0.52 -2.0
97,199 + GFF5467 0.52 -0.1
97,199 + GFF5467 0.52 -1.1
97,200 - GFF5467 0.52 -0.0
97,200 - GFF5467 0.52 -0.9
97,521 - GFF5467 0.84 -1.0
97,521 - GFF5467 0.84 -0.6
97,521 - GFF5467 0.84 +0.7
97,521 - GFF5467 0.84 -0.5
97,521 - GFF5467 0.84 -1.3
97,521 - GFF5467 0.84 -2.6
97,529 + GFF5467 0.84 -0.7
97,529 + GFF5467 0.84 +2.0
97,529 + GFF5467 0.84 -0.1
97,529 + GFF5467 0.84 +1.6
97,529 + GFF5467 0.84 -0.5
97,529 + GFF5467 0.84 -1.5
97,529 + GFF5467 0.84 -1.4
97,530 - GFF5467 0.84 +0.6
97,530 - GFF5467 0.84 -0.8
97,530 - GFF5467 0.84 -0.5
97,530 - GFF5467 0.84 +0.2
97,530 - GFF5467 0.84 -0.4
97,530 - GFF5467 0.84 -0.5
97,530 - GFF5467 0.84 +2.8
97,530 - GFF5467 0.84 -1.2
97,530 - GFF5467 0.84 -0.0
97,530 - GFF5467 0.84 -0.1
97,554 - GFF5467 0.87 -0.5
97,554 - GFF5467 0.87 +0.0
97,721 + -0.7
97,722 - -1.6
97,743 - -0.3
97,968 + GFF5468 0.14 -2.1
97,968 + GFF5468 0.14 +0.8
97,969 - GFF5468 0.14 +0.0
97,969 - GFF5468 0.14 +0.9
98,118 + GFF5468 0.25 -0.8
98,118 + GFF5468 0.25 -0.1
98,118 + GFF5468 0.25 +0.8
98,118 + GFF5468 0.25 -0.7
98,118 + GFF5468 0.25 -0.2
98,119 - GFF5468 0.25 +0.2
98,119 - GFF5468 0.25 -0.6
98,119 - GFF5468 0.25 +0.7
98,119 - GFF5468 0.25 +0.4
98,119 - GFF5468 0.25 -0.8
98,119 - GFF5468 0.25 +1.2
98,133 + GFF5468 0.26 +1.4
98,133 + GFF5468 0.26 -0.6
98,134 - GFF5468 0.26 -0.0
98,134 - GFF5468 0.26 +0.2
98,134 - GFF5468 0.26 -1.2
98,134 - GFF5468 0.26 -0.3
98,193 + GFF5468 0.30 +1.2
98,193 + GFF5468 0.30 +0.2
98,358 + GFF5468 0.42 -0.7
98,358 + GFF5468 0.42 -0.4
98,358 + GFF5468 0.42 +0.2
98,358 + GFF5468 0.42 -0.8
98,358 + GFF5468 0.42 -0.1
98,358 + GFF5468 0.42 +3.2
98,358 + GFF5468 0.42 -0.4
98,358 + GFF5468 0.42 +0.2
98,359 - GFF5468 0.42 +0.0
98,359 - GFF5468 0.42 -0.1
98,359 - GFF5468 0.42 +0.7
98,359 - GFF5468 0.42 -0.8
98,359 - GFF5468 0.42 +0.0
98,361 + GFF5468 0.42 -0.1
98,361 + GFF5468 0.42 -0.2
98,451 + GFF5468 0.49 +0.2
98,538 + GFF5468 0.55 -0.9

Or see this region's nucleotide sequence