Strain Fitness in Variovorax sp. SCN45 around GFF5384

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
11,895	-				-0.7
11,895	-				-1.6
11,895	-				+0.1
11,895	-				+2.7
11,895	-				-0.6
11,895	-				-0.0
11,895	-				+0.2
11,895	-				-0.5
11,895	-				-2.1
11,895	-				-0.5
11,895	-				+1.6
11,895	-				+1.2
11,895	-				+0.6
11,895	-				-0.1
11,895	-				-0.1
11,895	-				+0.9
11,895	-				+0.0
11,895	-				-0.6
11,895	-				+0.1
11,905	+				+1.0
11,905	+				-0.6
11,905	+				-0.1
11,905	+				-2.8
11,905	+				+0.7
11,905	+				+1.2
11,905	+				-0.8
11,906	-				-0.0
11,906	-				+0.7
11,906	-				-0.6
11,906	-				+0.4
11,906	-				-0.2
11,906	-				+0.2
11,906	-				+0.2
11,906	-				-0.3
11,906	-				-2.1
11,906	-				-0.1
11,907	+				-0.0
11,907	+				-2.0
11,907	+				+0.2
11,907	+				+0.3
11,907	+				+0.2
11,907	+				-1.5
11,908	-				+3.6
11,908	-				-0.3
11,908	-				+0.6
11,908	-				-0.2
11,908	-				-0.1
11,908	-				-0.5
11,908	-				-0.1
11,908	-				-0.6
11,908	-				-0.6
11,908	-				+0.1
11,908	-				+0.2
11,908	-				+0.6
11,908	-				+0.2
11,908	-				-0.4
11,908	-				-1.5
11,908	-				+0.1
11,908	-				-0.6
11,954	+				+1.7
11,954	+				-0.3
11,954	+				+1.7
11,954	+				+0.3
11,954	+				+0.9
11,954	+				-0.9
11,954	+				+1.5
11,955	-				+0.5
11,955	-				+1.0
11,955	-				+0.2
11,955	-				-0.6
11,955	-				-0.3
11,955	-				-0.9
11,955	-				-0.1
11,955	-				+0.1
11,963	+				-0.2
11,963	+				-0.9
11,963	+				-0.1
11,963	+				-0.2
11,963	+				-0.3
11,963	+				+0.6
11,963	+				+0.1
11,963	+				-0.3
11,963	+				-0.3
11,964	-				+0.4
11,964	-				+0.5
11,964	-				+2.7
11,964	-				-0.1
12,095	+		GFF5384	0.12	-0.2
12,095	+		GFF5384	0.12	+0.1
12,095	+		GFF5384	0.12	+0.5
12,096	-		GFF5384	0.12	-0.1
12,096	-		GFF5384	0.12	-1.1
12,096	-		GFF5384	0.12	+0.4
12,096	-		GFF5384	0.12	+0.1
12,096	-		GFF5384	0.12	-3.3
12,096	-		GFF5384	0.12	+1.0
12,096	-		GFF5384	0.12	-0.8
12,173	+		GFF5384	0.25	-0.0
12,173	+		GFF5384	0.25	+0.1
12,173	+		GFF5384	0.25	-1.3
12,173	+		GFF5384	0.25	+1.7
12,173	+		GFF5384	0.25	-0.2
12,173	+		GFF5384	0.25	-0.4
12,174	-		GFF5384	0.25	-0.1
12,174	-		GFF5384	0.25	+0.1
12,174	-		GFF5384	0.25	-0.5
12,174	-		GFF5384	0.25	+0.9
12,174	-		GFF5384	0.25	-0.2
12,174	-		GFF5384	0.25	-0.4
12,290	+		GFF5384	0.43	+0.0
12,290	+		GFF5384	0.43	+0.1
12,290	+		GFF5384	0.43	+1.0
12,290	+		GFF5384	0.43	-0.6
12,290	+		GFF5384	0.43	+0.2
12,290	+		GFF5384	0.43	-0.0
12,290	+		GFF5384	0.43	-0.8
12,290	+		GFF5384	0.43	-0.5
12,290	+		GFF5384	0.43	-0.7
12,290	+		GFF5384	0.43	+0.9
12,290	+		GFF5384	0.43	+0.2
12,291	-		GFF5384	0.43	-0.0
12,291	-		GFF5384	0.43	+0.4
12,291	-		GFF5384	0.43	+0.1
12,291	-		GFF5384	0.43	+0.3
12,291	-		GFF5384	0.43	-1.7
12,291	-		GFF5384	0.43	+1.2
12,291	-		GFF5384	0.43	+0.2
12,291	-		GFF5384	0.43	-0.3
12,291	-		GFF5384	0.43	+2.2
12,291	-		GFF5384	0.43	-0.4
12,291	-		GFF5384	0.43	+0.7
12,291	-		GFF5384	0.43	-0.9
12,291	-		GFF5384	0.43	+0.3
12,291	-		GFF5384	0.43	+0.9
12,291	-		GFF5384	0.43	+0.1
12,292	+		GFF5384	0.44	-0.5
12,292	+		GFF5384	0.44	-1.5
12,292	+		GFF5384	0.44	-0.3
12,292	+		GFF5384	0.44	+0.6
12,292	+		GFF5384	0.44	+0.9
12,292	+		GFF5384	0.44	+0.0
12,292	+		GFF5384	0.44	-0.8
12,292	+		GFF5384	0.44	+0.3
12,292	+		GFF5384	0.44	+0.7
12,292	+		GFF5384	0.44	+0.6
12,292	+		GFF5384	0.44	-0.5
12,292	+		GFF5384	0.44	+0.1
12,292	+		GFF5384	0.44	-1.4
12,292	+		GFF5384	0.44	+0.1
12,292	+		GFF5384	0.44	-0.6
12,293	-		GFF5384	0.44	-0.1
12,293	-		GFF5384	0.44	+0.3
12,293	-		GFF5384	0.44	+0.9
12,293	-		GFF5384	0.44	-0.2
12,293	-		GFF5384	0.44	+0.9
12,293	-		GFF5384	0.44	+0.1
12,293	-		GFF5384	0.44	-0.4
12,293	-		GFF5384	0.44	-0.9
12,293	-		GFF5384	0.44	-0.3
12,293	-		GFF5384	0.44	+0.4
12,293	-		GFF5384	0.44	-0.2
12,335	+		GFF5384	0.50	+0.1
12,335	+		GFF5384	0.50	+0.3
12,335	+		GFF5384	0.50	-0.5
12,335	+		GFF5384	0.50	-0.6
12,335	+		GFF5384	0.50	+0.3
12,335	+		GFF5384	0.50	+1.0
12,335	+		GFF5384	0.50	-1.2
12,335	+		GFF5384	0.50	-1.2
12,336	-		GFF5384	0.51	-0.6
12,336	-		GFF5384	0.51	+0.6
12,336	-		GFF5384	0.51	+1.0
12,336	-		GFF5384	0.51	-0.7
12,336	-		GFF5384	0.51	+0.6
12,336	-		GFF5384	0.51	-0.7
12,336	-		GFF5384	0.51	-1.4
12,341	+		GFF5384	0.51	-0.5
12,342	-		GFF5384	0.52	+0.5
12,342	-		GFF5384	0.52	-0.1
12,342	-		GFF5384	0.52	-1.0
12,342	-		GFF5384	0.52	+1.0
12,365	+		GFF5384	0.55	+0.1
12,365	+		GFF5384	0.55	-0.8
12,365	+		GFF5384	0.55	-1.1
12,365	+		GFF5384	0.55	-0.5
12,365	+		GFF5384	0.55	+0.8
12,365	+		GFF5384	0.55	+0.4
12,366	-		GFF5384	0.55	-0.3
12,366	-		GFF5384	0.55	-0.3
12,366	-		GFF5384	0.55	-1.5
12,366	-		GFF5384	0.55	-0.5
12,366	-		GFF5384	0.55	+0.6
12,366	-		GFF5384	0.55	+0.7
13,520	+		GFF5386	0.19	-0.1
13,521	-		GFF5386	0.20	+0.4
13,521	-		GFF5386	0.20	-0.7