Strain Fitness in Variovorax sp. SCN45 around GFF504

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF503 and GFF504 overlap by 4 nucleotidesGFF504 and GFF505 are separated by 24 nucleotidesGFF505 and GFF506 are separated by 126 nucleotides GFF503 - Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1), at 545,523 to 546,554 GFF503 GFF504 - SAM-dependent methyltransferases, at 546,551 to 547,399 GFF504 GFF505 - no description, at 547,424 to 547,996 GFF505 GFF506 - hypothetical protein, at 548,123 to 548,629 GFF506 Position (kb) 546 547 548Strain fitness (log2 ratio) -2 -1 0 1 2at 546.869 kb on + strand, within GFF504at 546.869 kb on + strand, within GFF504at 546.869 kb on + strand, within GFF504at 546.869 kb on + strand, within GFF504at 546.869 kb on + strand, within GFF504at 546.870 kb on - strand, within GFF504at 546.870 kb on - strand, within GFF504at 546.870 kb on - strand, within GFF504at 546.870 kb on - strand, within GFF504at 546.870 kb on - strand, within GFF504at 546.870 kb on - strand, within GFF504at 546.875 kb on + strand, within GFF504at 546.876 kb on - strand, within GFF504at 546.876 kb on - strand, within GFF504at 546.876 kb on - strand, within GFF504at 546.930 kb on - strand, within GFF504at 547.067 kb on + strand, within GFF504at 547.067 kb on + strand, within GFF504at 547.067 kb on + strand, within GFF504at 547.067 kb on + strand, within GFF504at 547.067 kb on + strand, within GFF504at 547.067 kb on + strand, within GFF504at 547.068 kb on - strand, within GFF504at 547.068 kb on - strand, within GFF504at 547.068 kb on - strand, within GFF504at 547.068 kb on - strand, within GFF504at 547.073 kb on + strand, within GFF504at 547.115 kb on + strand, within GFF504at 547.115 kb on + strand, within GFF504at 547.115 kb on + strand, within GFF504at 547.115 kb on + strand, within GFF504at 547.116 kb on - strand, within GFF504at 547.116 kb on - strand, within GFF504at 547.154 kb on + strand, within GFF504at 547.154 kb on + strand, within GFF504at 547.155 kb on - strand, within GFF504at 547.155 kb on - strand, within GFF504at 547.275 kb on - strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.281 kb on - strand, within GFF504at 547.281 kb on - strand, within GFF504at 547.281 kb on - strand, within GFF504at 547.373 kb on + strandat 547.373 kb on + strandat 547.374 kb on - strandat 547.374 kb on - strandat 547.374 kb on - strandat 547.374 kb on - strandat 547.479 kb on + strandat 547.479 kb on + strandat 547.479 kb on + strandat 547.480 kb on - strandat 547.533 kb on + strand, within GFF505at 547.533 kb on + strand, within GFF505at 547.533 kb on + strand, within GFF505at 547.533 kb on + strand, within GFF505at 547.534 kb on - strand, within GFF505at 547.534 kb on - strand, within GFF505at 547.549 kb on - strand, within GFF505at 547.549 kb on - strand, within GFF505at 547.560 kb on + strand, within GFF505at 547.560 kb on + strand, within GFF505at 547.561 kb on - strand, within GFF505at 547.561 kb on - strand, within GFF505at 547.561 kb on - strand, within GFF505at 547.561 kb on - strand, within GFF505at 547.657 kb on - strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.716 kb on + strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.998 kb on + strandat 548.139 kb on + strandat 548.140 kb on - strandat 548.140 kb on - strandat 548.140 kb on - strandat 548.184 kb on + strand, within GFF506at 548.185 kb on - strand, within GFF506at 548.235 kb on + strand, within GFF506

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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546,869 + GFF504 0.37 -0.9
546,869 + GFF504 0.37 +1.8
546,869 + GFF504 0.37 +2.1
546,869 + GFF504 0.37 -0.1
546,869 + GFF504 0.37 -1.2
546,870 - GFF504 0.38 +0.8
546,870 - GFF504 0.38 -1.7
546,870 - GFF504 0.38 -0.3
546,870 - GFF504 0.38 +1.0
546,870 - GFF504 0.38 -0.2
546,870 - GFF504 0.38 -0.5
546,875 + GFF504 0.38 -0.9
546,876 - GFF504 0.38 +0.6
546,876 - GFF504 0.38 +0.7
546,876 - GFF504 0.38 +1.1
546,930 - GFF504 0.45 -0.3
547,067 + GFF504 0.61 -0.0
547,067 + GFF504 0.61 -0.2
547,067 + GFF504 0.61 -0.9
547,067 + GFF504 0.61 -0.4
547,067 + GFF504 0.61 -0.2
547,067 + GFF504 0.61 -1.5
547,068 - GFF504 0.61 -0.4
547,068 - GFF504 0.61 -0.3
547,068 - GFF504 0.61 -1.0
547,068 - GFF504 0.61 +0.4
547,073 + GFF504 0.61 +0.4
547,115 + GFF504 0.66 -0.7
547,115 + GFF504 0.66 +0.6
547,115 + GFF504 0.66 -0.5
547,115 + GFF504 0.66 -1.0
547,116 - GFF504 0.67 +0.3
547,116 - GFF504 0.67 +0.8
547,154 + GFF504 0.71 -0.1
547,154 + GFF504 0.71 -0.2
547,155 - GFF504 0.71 -1.2
547,155 - GFF504 0.71 -0.8
547,275 - GFF504 0.85 -0.7
547,280 + GFF504 0.86 -0.2
547,280 + GFF504 0.86 -0.7
547,280 + GFF504 0.86 -0.8
547,280 + GFF504 0.86 -0.7
547,281 - GFF504 0.86 +0.1
547,281 - GFF504 0.86 -0.2
547,281 - GFF504 0.86 -0.1
547,373 + -0.5
547,373 + +0.1
547,374 - -0.7
547,374 - +0.0
547,374 - -0.1
547,374 - -1.4
547,479 + +0.0
547,479 + +0.0
547,479 + -0.3
547,480 - -1.0
547,533 + GFF505 0.19 -1.8
547,533 + GFF505 0.19 -0.3
547,533 + GFF505 0.19 -0.7
547,533 + GFF505 0.19 -1.4
547,534 - GFF505 0.19 -1.4
547,534 - GFF505 0.19 -0.2
547,549 - GFF505 0.22 -1.0
547,549 - GFF505 0.22 +0.7
547,560 + GFF505 0.24 -1.2
547,560 + GFF505 0.24 -1.1
547,561 - GFF505 0.24 -0.7
547,561 - GFF505 0.24 +0.3
547,561 - GFF505 0.24 -0.2
547,561 - GFF505 0.24 -1.2
547,657 - GFF505 0.41 -0.9
547,707 + GFF505 0.49 -0.1
547,707 + GFF505 0.49 -0.2
547,707 + GFF505 0.49 -1.9
547,707 + GFF505 0.49 +0.1
547,708 - GFF505 0.50 -0.8
547,708 - GFF505 0.50 -0.0
547,708 - GFF505 0.50 -1.0
547,708 - GFF505 0.50 -0.6
547,708 - GFF505 0.50 -1.1
547,708 - GFF505 0.50 -0.0
547,716 + GFF505 0.51 -1.0
547,717 - GFF505 0.51 +1.6
547,717 - GFF505 0.51 -2.4
547,717 - GFF505 0.51 -1.1
547,717 - GFF505 0.51 -1.3
547,717 - GFF505 0.51 -0.3
547,764 + GFF505 0.59 -2.6
547,764 + GFF505 0.59 -1.1
547,764 + GFF505 0.59 -1.6
547,764 + GFF505 0.59 +0.2
547,764 + GFF505 0.59 -0.1
547,765 - GFF505 0.60 +0.9
547,765 - GFF505 0.60 +0.8
547,765 - GFF505 0.60 -1.1
547,765 - GFF505 0.60 -0.4
547,765 - GFF505 0.60 -1.2
547,998 + -0.5
548,139 + -0.3
548,140 - +0.6
548,140 - -0.7
548,140 - +0.2
548,184 + GFF506 0.12 +0.2
548,185 - GFF506 0.12 -1.1
548,235 + GFF506 0.22 -0.2

Or see this region's nucleotide sequence