Strain Fitness in Variovorax sp. SCN45 around GFF486

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
524,791	+		GFF485	0.48	-0.4
524,791	+		GFF485	0.48	-0.2
524,791	+		GFF485	0.48	-0.4
524,791	+		GFF485	0.48	-0.9
524,791	+		GFF485	0.48	+1.2
524,792	-		GFF485	0.48	-1.1
524,792	-		GFF485	0.48	-1.0
524,792	-		GFF485	0.48	-2.7
524,792	-		GFF485	0.48	+1.4
524,792	-		GFF485	0.48	-0.5
524,792	-		GFF485	0.48	-0.6
524,890	+		GFF485	0.60	+0.6
524,890	+		GFF485	0.60	-0.7
524,890	+		GFF485	0.60	-0.7
524,890	+		GFF485	0.60	-0.0
524,890	+		GFF485	0.60	+0.6
524,890	+		GFF485	0.60	-0.1
524,890	+		GFF485	0.60	-1.2
524,890	+		GFF485	0.60	-0.2
524,890	+		GFF485	0.60	-1.5
524,890	+		GFF485	0.60	+0.5
524,891	-		GFF485	0.60	+0.2
524,891	-		GFF485	0.60	+0.7
524,891	-		GFF485	0.60	-0.7
524,891	-		GFF485	0.60	-0.2
524,891	-		GFF485	0.60	+0.3
525,148	+				-0.4
525,148	+				+1.4
525,148	+				-0.3
525,148	+				-0.6
525,148	+				-0.5
525,149	-				-1.4
525,149	-				-0.6
525,149	-				-0.3
525,149	-				-0.0
525,431	+		GFF486	0.31	+0.3
525,431	+		GFF486	0.31	-1.8
525,432	-		GFF486	0.31	-0.8
525,432	-		GFF486	0.31	-0.6
525,432	-		GFF486	0.31	-2.4
525,564	+		GFF486	0.52	-0.4
525,564	+		GFF486	0.52	+1.3
525,564	+		GFF486	0.52	-1.9
525,565	-		GFF486	0.52	-1.0
525,723	+		GFF486	0.76	-0.5
525,723	+		GFF486	0.76	-0.2
525,723	+		GFF486	0.76	-0.6
525,723	+		GFF486	0.76	-0.0
525,723	+		GFF486	0.76	-1.9
525,723	+		GFF486	0.76	+0.6
525,723	+		GFF486	0.76	-1.4
525,724	-		GFF486	0.76	+0.7
525,724	-		GFF486	0.76	+0.1
525,724	-		GFF486	0.76	+1.0
525,724	-		GFF486	0.76	+1.0
525,724	-		GFF486	0.76	+0.1
525,724	-		GFF486	0.76	-0.0
525,724	-		GFF486	0.76	-0.5
525,724	-		GFF486	0.76	-0.3
525,765	+		GFF486	0.83	-1.4
525,766	-		GFF486	0.83	+0.6
525,766	-		GFF486	0.83	-0.6
525,766	-		GFF486	0.83	-2.3
525,766	-		GFF486	0.83	+0.2
525,864	+				-0.6
525,864	+				-0.2
525,864	+				-0.3
525,864	+				-0.9
525,864	+				+0.6
525,864	+				-0.6
525,864	+				-0.5
525,864	+				+0.0
525,865	-				-0.0
525,865	-				+0.8
525,865	-				-0.7
525,865	-				-0.8
525,889	+				-0.7
525,889	+				+0.6
525,889	+				+0.6
525,889	+				-0.7
525,889	+				-0.4
525,890	-				-0.8
525,890	-				-0.2
525,890	-				-0.2
525,890	-				+0.1
525,890	-				-0.0
525,890	-				+0.4
526,008	-				+0.6
526,116	-				+1.0
526,318	-				-0.3
526,320	-				-0.7
526,326	-				-1.7
526,326	-				-0.2