Strain Fitness in Variovorax sp. SCN45 around GFF46

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
48,649	+		GFF45	0.65	-0.3
48,859	+		GFF45	0.74	-1.0
48,860	-		GFF45	0.74	-0.6
48,956	-		GFF45	0.78	-1.2
48,956	-		GFF45	0.78	-0.6
48,956	-		GFF45	0.78	-0.8
48,956	-		GFF45	0.78	-0.7
48,991	+		GFF45	0.80	-0.5
48,992	-		GFF45	0.80	-0.6
48,992	-		GFF45	0.80	-0.5
48,992	-		GFF45	0.80	-0.2
48,992	-		GFF45	0.80	-0.1
48,992	-		GFF45	0.80	-0.1
49,057	+		GFF45	0.83	-0.9
49,057	+		GFF45	0.83	-0.5
49,057	+		GFF45	0.83	+0.1
49,057	+		GFF45	0.83	+0.6
49,057	+		GFF45	0.83	+0.6
49,058	-		GFF45	0.83	+0.3
49,058	-		GFF45	0.83	-0.6
49,058	-		GFF45	0.83	-0.4
49,162	+		GFF45	0.87	+0.4
49,187	-		GFF45	0.88	+1.0
49,187	-		GFF45	0.88	-0.9
49,187	-		GFF45	0.88	-0.2
49,187	-		GFF45	0.88	+1.1
49,333	+				+1.3
49,333	+				-0.1
49,333	+				-0.8
49,334	-				-0.9
49,334	-				-0.5
49,369	+				-1.9
49,370	-				+0.1
49,370	-				+0.4
49,370	-				+0.0
49,373	-				-0.1
49,511	-				+0.6
49,511	-				-0.5
50,222	+		GFF46	0.86	+2.6
50,222	+		GFF46	0.86	+0.6
50,223	-		GFF46	0.86	-0.2
50,356	-				-0.1
50,445	+				-0.7
50,445	+				-0.3
50,445	+				+1.2
50,445	+				-0.3
50,445	+				+0.0
50,551	-				-1.3
50,709	+		GFF47	0.13	+0.5
50,710	-		GFF47	0.13	-0.6