Strain Fitness in Variovorax sp. SCN45 around GFF4414

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
50,026	+		GFF4412	0.78	-0.8
50,026	+		GFF4412	0.78	-0.7
50,026	+		GFF4412	0.78	-0.9
50,026	+		GFF4412	0.78	+0.1
50,026	+		GFF4412	0.78	-0.9
50,026	+		GFF4412	0.78	-0.8
50,026	+		GFF4412	0.78	-0.1
50,026	+		GFF4412	0.78	-0.1
50,026	+		GFF4412	0.78	-1.6
50,026	+		GFF4412	0.78	-0.0
50,026	+		GFF4412	0.78	-0.6
50,027	-		GFF4412	0.78	-1.9
50,027	-		GFF4412	0.78	-0.3
50,027	-		GFF4412	0.78	-0.0
50,027	-		GFF4412	0.78	+0.3
50,027	-		GFF4412	0.78	-2.4
50,027	-		GFF4412	0.78	-1.1
50,027	-		GFF4412	0.78	-0.9
50,027	-		GFF4412	0.78	-0.4
50,027	-		GFF4412	0.78	-0.3
50,091	+		GFF4412	0.81	+0.5
50,091	+		GFF4412	0.81	+1.4
50,091	+		GFF4412	0.81	-1.3
50,092	-		GFF4412	0.81	-0.4
50,092	-		GFF4412	0.81	-0.4
50,092	-		GFF4412	0.81	-0.8
50,092	-		GFF4412	0.81	+0.9
50,094	+		GFF4412	0.81	+0.2
50,094	+		GFF4412	0.81	-0.2
50,094	+		GFF4412	0.81	-0.0
50,094	+		GFF4412	0.81	-1.3
50,166	+		GFF4412	0.85	-0.6
50,166	+		GFF4412	0.85	-1.1
50,167	-		GFF4412	0.85	-0.1
50,167	-		GFF4412	0.85	+0.5
50,311	+				-1.2
50,311	+				-0.2
50,311	+				-0.1
50,311	+				-0.5
50,312	-				-0.7
50,312	-				-0.8
50,312	-				-0.5
50,312	-				+0.6
50,328	+				-0.6
50,328	+				+1.7
50,328	+				-0.4
50,328	+				-0.8
50,328	+				-1.2
50,328	+				-0.9
50,329	-				-2.3
50,329	-				+0.5
50,329	-				+0.1
50,476	+				-1.4
50,476	+				+0.7
50,476	+				-0.8
50,476	+				-0.1
50,476	+				+1.1
50,476	+				-2.4
50,476	+				-1.2
50,476	+				-1.1
50,476	+				-0.7
50,476	+				+0.8
50,476	+				+0.5
50,476	+				+0.5
50,477	-				+0.2
50,477	-				+0.5
50,477	-				-0.0
50,477	-				-1.1
50,477	-				+0.1
50,477	-				-0.7
50,477	-				+0.1
50,477	-				-0.4
50,477	-				-0.7
50,477	-				-0.5
50,477	-				-0.7
50,477	-				-0.5
50,498	+				-1.7
50,499	-				-1.6
50,515	+				+0.1
50,515	+				-0.1
50,686	+		GFF4413	0.44	-1.4
50,686	+		GFF4413	0.44	+0.5
50,686	+		GFF4413	0.44	-0.4
50,687	-		GFF4413	0.44	-0.3
50,687	-		GFF4413	0.44	-0.9
50,687	-		GFF4413	0.44	+0.0
50,687	-		GFF4413	0.44	-0.5
50,738	+		GFF4413	0.55	-0.2
50,741	+		GFF4413	0.55	-0.7
50,741	+		GFF4413	0.55	-0.5
50,741	+		GFF4413	0.55	+0.9
50,742	-		GFF4413	0.56	-0.2
50,742	-		GFF4413	0.56	-0.3
50,742	-		GFF4413	0.56	-1.8
50,742	-		GFF4413	0.56	-0.4
50,742	-		GFF4413	0.56	-2.0
50,742	-		GFF4413	0.56	-0.2
50,742	-		GFF4413	0.56	-0.9
50,742	-		GFF4413	0.56	-1.0
50,742	-		GFF4413	0.56	-0.8
50,742	-		GFF4413	0.56	-0.0
50,742	-		GFF4413	0.56	-0.9
50,742	-		GFF4413	0.56	-0.2
50,874	+		GFF4413	0.83	-0.7
50,874	+		GFF4413	0.83	-0.6
50,874	+		GFF4413	0.83	+0.2
50,874	+		GFF4413	0.83	-0.4
50,874	+		GFF4413	0.83	-0.7
50,874	+		GFF4413	0.83	-0.4
50,874	+		GFF4413	0.83	-0.1
50,874	+		GFF4413	0.83	-0.6
50,874	+		GFF4413	0.83	-0.4
50,875	-		GFF4413	0.83	-0.3
50,875	-		GFF4413	0.83	+0.7
50,875	-		GFF4413	0.83	-0.2
50,875	-		GFF4413	0.83	-0.0
50,875	-		GFF4413	0.83	-0.4
50,875	-		GFF4413	0.83	+0.9
50,875	-		GFF4413	0.83	-0.4
50,875	-		GFF4413	0.83	-0.2
51,069	-		GFF4414	0.11	+0.4
51,337	+		GFF4414	0.36	+0.1
51,337	+		GFF4414	0.36	-1.1
51,338	-		GFF4414	0.36	+1.2
51,338	-		GFF4414	0.36	+0.1
51,338	-		GFF4414	0.36	+3.1
51,474	-		GFF4414	0.49	-0.5
51,474	-		GFF4414	0.49	+1.1
51,474	-		GFF4414	0.49	+0.9
51,474	-		GFF4414	0.49	-0.1
51,889	+		GFF4414	0.88	-0.4
51,983	+				+0.1
51,984	-				+0.2
51,984	-				-0.5
52,045	+				-0.7
52,045	+				-1.0
52,045	+				-1.6
52,100	+		GFF4415	0.23	+0.0
52,100	+		GFF4415	0.23	-0.3
52,396	+				+1.0
52,396	+				-1.1
52,411	+				-1.2
52,411	+				-0.1
52,498	+		GFF4416	0.37	-0.3
52,591	-		GFF4416	0.71	+0.1
52,940	+		GFF4417	0.10	+1.2
52,941	-		GFF4417	0.10	-0.1