Strain Fitness in Variovorax sp. SCN45 around GFF4067

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4066 and GFF4067 are separated by 186 nucleotidesGFF4067 and GFF4068 are separated by 44 nucleotides GFF4066 - Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP), at 279,887 to 281,173 GFF4066 GFF4067 - FIG00897050: hypothetical protein, at 281,360 to 283,003 GFF4067 GFF4068 - Heavy metal sensor histidine kinase, at 283,048 to 284,445 GFF4068 Position (kb) 281 282 283 284Strain fitness (log2 ratio) -2 -1 0 1 2at 280.621 kb on - strand, within GFF4066at 280.668 kb on + strand, within GFF4066at 280.668 kb on + strand, within GFF4066at 280.668 kb on + strand, within GFF4066at 280.722 kb on + strand, within GFF4066at 280.723 kb on - strand, within GFF4066at 280.723 kb on - strand, within GFF4066at 280.869 kb on + strand, within GFF4066at 280.869 kb on + strand, within GFF4066at 280.870 kb on - strand, within GFF4066at 281.091 kb on + strandat 281.091 kb on + strandat 281.091 kb on + strandat 281.091 kb on + strandat 281.091 kb on + strandat 281.091 kb on + strandat 281.091 kb on + strandat 281.092 kb on - strandat 281.092 kb on - strandat 281.092 kb on - strandat 281.263 kb on - strandat 281.275 kb on - strandat 281.303 kb on - strandat 281.303 kb on - strandat 281.390 kb on - strandat 281.522 kb on + strandat 281.522 kb on + strandat 281.523 kb on - strandat 281.523 kb on - strandat 281.523 kb on - strandat 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.628 kb on - strand, within GFF4067at 281.628 kb on - strand, within GFF4067at 281.673 kb on - strand, within GFF4067at 281.673 kb on - strand, within GFF4067at 281.673 kb on - strand, within GFF4067at 281.786 kb on + strand, within GFF4067at 281.786 kb on + strand, within GFF4067at 281.786 kb on + strand, within GFF4067at 281.786 kb on + strand, within GFF4067at 281.787 kb on - strand, within GFF4067at 281.787 kb on - strand, within GFF4067at 281.787 kb on - strand, within GFF4067at 281.927 kb on + strand, within GFF4067at 282.083 kb on + strand, within GFF4067at 282.143 kb on + strand, within GFF4067at 282.143 kb on + strand, within GFF4067at 282.144 kb on - strand, within GFF4067at 282.144 kb on - strand, within GFF4067at 282.266 kb on + strand, within GFF4067at 282.266 kb on + strand, within GFF4067at 282.267 kb on - strand, within GFF4067at 282.267 kb on - strand, within GFF4067at 282.267 kb on - strand, within GFF4067at 282.267 kb on - strand, within GFF4067at 282.281 kb on + strand, within GFF4067at 282.282 kb on - strand, within GFF4067at 282.306 kb on - strand, within GFF4067at 282.306 kb on - strand, within GFF4067at 282.587 kb on + strand, within GFF4067at 282.587 kb on + strand, within GFF4067at 282.588 kb on - strand, within GFF4067at 282.588 kb on - strand, within GFF4067at 282.588 kb on - strand, within GFF4067at 282.588 kb on - strand, within GFF4067at 282.731 kb on + strand, within GFF4067at 282.732 kb on - strand, within GFF4067at 282.732 kb on - strand, within GFF4067at 282.732 kb on - strand, within GFF4067at 282.732 kb on - strand, within GFF4067at 282.807 kb on + strand, within GFF4067at 282.807 kb on + strand, within GFF4067at 282.807 kb on + strand, within GFF4067at 282.807 kb on + strand, within GFF4067at 282.808 kb on - strand, within GFF4067at 282.808 kb on - strand, within GFF4067at 282.833 kb on + strand, within GFF4067at 282.834 kb on - strand, within GFF4067at 283.332 kb on - strand, within GFF4068at 283.721 kb on + strand, within GFF4068at 283.721 kb on + strand, within GFF4068at 283.787 kb on + strand, within GFF4068at 283.788 kb on - strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.997 kb on - strand, within GFF4068

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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280,621 - GFF4066 0.57 -0.5
280,668 + GFF4066 0.61 +0.0
280,668 + GFF4066 0.61 -1.2
280,668 + GFF4066 0.61 -0.3
280,722 + GFF4066 0.65 -0.5
280,723 - GFF4066 0.65 -0.1
280,723 - GFF4066 0.65 -0.4
280,869 + GFF4066 0.76 +1.5
280,869 + GFF4066 0.76 +0.4
280,870 - GFF4066 0.76 -0.2
281,091 + -0.7
281,091 + -0.2
281,091 + -0.5
281,091 + +0.3
281,091 + +0.3
281,091 + +0.1
281,091 + +0.1
281,092 - +0.9
281,092 - -0.3
281,092 - +0.5
281,263 - +1.3
281,275 - -0.6
281,303 - -1.1
281,303 - +0.3
281,390 - -1.7
281,522 + +1.9
281,522 + +0.5
281,523 - -0.5
281,523 - -0.4
281,523 - +0.1
281,549 + GFF4067 0.11 -1.1
281,549 + GFF4067 0.11 +1.1
281,549 + GFF4067 0.11 -1.2
281,549 + GFF4067 0.11 +0.3
281,549 + GFF4067 0.11 +0.8
281,549 + GFF4067 0.11 +0.8
281,549 + GFF4067 0.11 -0.7
281,549 + GFF4067 0.11 -0.3
281,549 + GFF4067 0.11 +0.6
281,549 + GFF4067 0.11 -1.1
281,549 + GFF4067 0.11 +0.2
281,549 + GFF4067 0.11 +0.6
281,549 + GFF4067 0.11 -1.7
281,550 - GFF4067 0.12 -0.7
281,550 - GFF4067 0.12 -1.1
281,550 - GFF4067 0.12 -1.9
281,550 - GFF4067 0.12 -0.4
281,550 - GFF4067 0.12 -0.1
281,550 - GFF4067 0.12 -0.3
281,550 - GFF4067 0.12 -0.7
281,550 - GFF4067 0.12 +0.8
281,550 - GFF4067 0.12 +0.1
281,628 - GFF4067 0.16 -0.9
281,628 - GFF4067 0.16 -0.8
281,673 - GFF4067 0.19 +0.2
281,673 - GFF4067 0.19 +0.5
281,673 - GFF4067 0.19 -0.3
281,786 + GFF4067 0.26 -0.3
281,786 + GFF4067 0.26 -0.5
281,786 + GFF4067 0.26 -0.7
281,786 + GFF4067 0.26 -1.7
281,787 - GFF4067 0.26 -0.9
281,787 - GFF4067 0.26 +0.1
281,787 - GFF4067 0.26 +0.1
281,927 + GFF4067 0.34 -0.4
282,083 + GFF4067 0.44 -1.2
282,143 + GFF4067 0.48 -1.4
282,143 + GFF4067 0.48 +0.3
282,144 - GFF4067 0.48 +0.8
282,144 - GFF4067 0.48 +0.7
282,266 + GFF4067 0.55 -0.5
282,266 + GFF4067 0.55 -0.6
282,267 - GFF4067 0.55 -1.0
282,267 - GFF4067 0.55 -1.7
282,267 - GFF4067 0.55 +0.7
282,267 - GFF4067 0.55 +0.1
282,281 + GFF4067 0.56 -0.2
282,282 - GFF4067 0.56 +0.0
282,306 - GFF4067 0.58 +0.6
282,306 - GFF4067 0.58 -1.0
282,587 + GFF4067 0.75 -0.4
282,587 + GFF4067 0.75 +0.0
282,588 - GFF4067 0.75 -1.8
282,588 - GFF4067 0.75 -0.8
282,588 - GFF4067 0.75 -0.4
282,588 - GFF4067 0.75 -1.2
282,731 + GFF4067 0.83 -1.2
282,732 - GFF4067 0.83 -0.3
282,732 - GFF4067 0.83 -0.2
282,732 - GFF4067 0.83 -1.2
282,732 - GFF4067 0.83 -1.4
282,807 + GFF4067 0.88 -0.8
282,807 + GFF4067 0.88 +0.8
282,807 + GFF4067 0.88 -0.2
282,807 + GFF4067 0.88 +0.3
282,808 - GFF4067 0.88 +0.3
282,808 - GFF4067 0.88 +0.2
282,833 + GFF4067 0.90 +0.3
282,834 - GFF4067 0.90 -0.6
283,332 - GFF4068 0.20 +1.1
283,721 + GFF4068 0.48 -0.5
283,721 + GFF4068 0.48 -1.2
283,787 + GFF4068 0.53 -0.9
283,788 - GFF4068 0.53 -0.8
283,996 + GFF4068 0.68 -1.8
283,996 + GFF4068 0.68 -0.1
283,996 + GFF4068 0.68 -0.5
283,996 + GFF4068 0.68 +0.1
283,996 + GFF4068 0.68 -2.1
283,996 + GFF4068 0.68 +0.3
283,996 + GFF4068 0.68 -0.7
283,997 - GFF4068 0.68 -1.4

Or see this region's nucleotide sequence