Strain Fitness in Variovorax sp. SCN45 around GFF3893

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
90,587	-		GFF3891	0.30	+0.2
90,612	+		GFF3891	0.33	-1.6
90,612	+		GFF3891	0.33	-0.6
90,612	+		GFF3891	0.33	-0.5
90,612	+		GFF3891	0.33	-1.4
90,612	+		GFF3891	0.33	-0.5
90,612	+		GFF3891	0.33	+0.3
90,612	+		GFF3891	0.33	-0.1
90,612	+		GFF3891	0.33	+0.3
90,613	-		GFF3891	0.33	-0.1
90,613	-		GFF3891	0.33	+1.0
90,613	-		GFF3891	0.33	+0.4
90,613	-		GFF3891	0.33	-0.8
90,613	-		GFF3891	0.33	-1.7
90,613	-		GFF3891	0.33	-0.6
90,613	-		GFF3891	0.33	-1.5
90,613	-		GFF3891	0.33	-0.8
90,960	+		GFF3891	0.70	-0.2
90,961	-		GFF3891	0.70	-1.7
90,961	-		GFF3891	0.70	+0.8
90,961	-		GFF3891	0.70	+0.1
90,996	+		GFF3891	0.73	-0.2
90,996	+		GFF3891	0.73	+0.5
90,996	+		GFF3891	0.73	-1.5
90,996	+		GFF3891	0.73	-0.1
90,996	+		GFF3891	0.73	-0.5
90,996	+		GFF3891	0.73	-0.4
90,996	+		GFF3891	0.73	-0.1
90,996	+		GFF3891	0.73	-0.6
90,997	-		GFF3891	0.74	-0.4
90,997	-		GFF3891	0.74	+0.1
90,997	-		GFF3891	0.74	+0.2
90,997	-		GFF3891	0.74	+0.4
90,997	-		GFF3891	0.74	-1.1
91,068	+		GFF3891	0.81	+0.2
91,282	+		GFF3892	0.33	-0.5
91,283	-		GFF3892	0.34	+0.6
91,328	+		GFF3892	0.73	+0.1
91,386	+				+0.6
91,386	+				-1.4
91,402	+				-0.3
91,402	+				-0.0
91,402	+				-0.4
91,402	+				-0.2
91,402	+				-0.5
91,402	+				-0.2
91,402	+				-0.2
91,403	-				+0.9
91,403	-				+1.1
91,403	-				-0.1
91,403	-				+0.6
91,403	-				-0.9
91,415	+				+0.6
91,416	+				-1.3
91,416	+				-0.5
91,416	+				-0.8
91,417	-				-0.3
91,417	-				+0.8
91,417	-				-0.9
91,417	-				-0.4
91,420	-				-2.1
91,420	-				-0.5
91,426	-				-1.0
91,451	+				+0.7
91,451	+				+0.9
91,452	-				+1.0
91,458	-				-0.9
91,458	-				+0.5
91,558	+				+0.5
91,558	+				-0.4
91,558	+				-0.9
91,558	+				+0.3
91,558	+				+1.7
91,558	+				-1.2
91,558	+				+0.1
91,558	+				+1.3
91,558	+				+0.4
91,558	+				+0.5
91,558	+				+0.9
91,559	-				-1.0
91,559	-				+0.6
91,573	+				+1.4
91,847	+				+0.5
91,847	+				+0.9
91,847	+				+0.1
91,847	+				+0.7
91,847	+				-0.8
91,847	+				+0.9
91,847	+				-0.1
91,847	+				-2.0
91,847	+				-0.1
91,847	+				-0.1
91,847	+				-0.3
91,847	+				-0.8
91,847	+				-0.4
91,847	+				-0.3
91,847	+				-1.5
91,848	-				-0.0
91,848	-				-0.3
91,848	-				-0.1
92,322	+		GFF3893	0.17	-0.7
92,525	+		GFF3893	0.21	-0.7
92,525	+		GFF3893	0.21	-0.1
92,597	+		GFF3893	0.22	-0.4
92,597	+		GFF3893	0.22	-0.3
92,597	+		GFF3893	0.22	-0.3
92,597	+		GFF3893	0.22	-0.6
92,597	+		GFF3893	0.22	-0.4
92,597	+		GFF3893	0.22	-0.9
92,597	+		GFF3893	0.22	+0.5
92,597	+		GFF3893	0.22	-0.5
92,598	-		GFF3893	0.22	-0.3
92,598	-		GFF3893	0.22	+0.9
92,598	-		GFF3893	0.22	-0.6
92,598	-		GFF3893	0.22	+1.1
92,598	-		GFF3893	0.22	+1.3
92,598	-		GFF3893	0.22	-0.8
92,598	-		GFF3893	0.22	+0.0
92,801	+		GFF3893	0.26	-1.0
92,801	+		GFF3893	0.26	-0.1
92,801	+		GFF3893	0.26	+0.1
92,801	+		GFF3893	0.26	-0.2
92,801	+		GFF3893	0.26	+0.6
92,801	+		GFF3893	0.26	+0.1
92,801	+		GFF3893	0.26	-1.4
92,802	-		GFF3893	0.27	+0.5
92,802	-		GFF3893	0.27	+0.3
92,802	-		GFF3893	0.27	-1.1
92,802	-		GFF3893	0.27	+0.5
92,802	-		GFF3893	0.27	+0.9
92,802	-		GFF3893	0.27	+0.1
92,802	-		GFF3893	0.27	-0.2
92,802	-		GFF3893	0.27	+0.9
93,825	+		GFF3893	0.47	-0.4
93,825	+		GFF3893	0.47	+0.3
93,826	-		GFF3893	0.47	+0.9
93,826	-		GFF3893	0.47	-0.4
93,931	+		GFF3893	0.49	-0.7
93,931	+		GFF3893	0.49	+1.5
93,932	-		GFF3893	0.49	-0.5
94,079	+		GFF3893	0.52	+0.3
94,079	+		GFF3893	0.52	-1.9
94,079	+		GFF3893	0.52	-0.2
94,079	+		GFF3893	0.52	-0.1
94,079	+		GFF3893	0.52	-0.4
94,079	+		GFF3893	0.52	+0.2
94,079	+		GFF3893	0.52	-0.3
94,080	-		GFF3893	0.52	-1.1
94,080	-		GFF3893	0.52	-1.1
94,080	-		GFF3893	0.52	-0.6
94,080	-		GFF3893	0.52	+1.2
94,080	-		GFF3893	0.52	+0.1
94,080	-		GFF3893	0.52	-1.1
94,080	-		GFF3893	0.52	-0.6
94,080	-		GFF3893	0.52	-0.5
94,080	-		GFF3893	0.52	-1.2
94,110	+		GFF3893	0.52	-0.6
94,110	+		GFF3893	0.52	+0.9
94,110	+		GFF3893	0.52	-0.2
94,111	-		GFF3893	0.52	-0.1
94,111	-		GFF3893	0.52	-0.9
94,111	-		GFF3893	0.52	-1.2
94,202	+		GFF3893	0.54	-0.5
94,202	+		GFF3893	0.54	-0.5
94,202	+		GFF3893	0.54	-1.0
94,202	+		GFF3893	0.54	+0.2
94,202	+		GFF3893	0.54	+0.4
94,202	+		GFF3893	0.54	+0.3
94,202	+		GFF3893	0.54	-0.9
94,202	+		GFF3893	0.54	-0.5
94,202	+		GFF3893	0.54	+0.6
94,202	+		GFF3893	0.54	-0.1
94,203	-		GFF3893	0.54	+2.1
94,203	-		GFF3893	0.54	-0.6
94,203	-		GFF3893	0.54	+1.0
94,280	+		GFF3893	0.56	-0.9
94,280	+		GFF3893	0.56	-0.0
94,280	+		GFF3893	0.56	-0.8
94,280	+		GFF3893	0.56	+0.4
94,280	+		GFF3893	0.56	-0.8
94,280	+		GFF3893	0.56	-0.6
94,281	-		GFF3893	0.56	+0.9
94,281	-		GFF3893	0.56	-1.2
94,970	+		GFF3893	0.70	-0.7
94,970	+		GFF3893	0.70	-0.6
94,970	+		GFF3893	0.70	+0.7
94,970	+		GFF3893	0.70	-0.8
94,970	+		GFF3893	0.70	+1.5
94,970	+		GFF3893	0.70	-0.2
95,433	-		GFF3893	0.79	+1.9
95,441	+		GFF3893	0.79	-0.3
95,441	+		GFF3893	0.79	-2.6
95,441	+		GFF3893	0.79	-0.3
95,442	-		GFF3893	0.79	-0.2
95,442	-		GFF3893	0.79	-1.5
95,477	+		GFF3893	0.80	+0.0
95,477	+		GFF3893	0.80	+0.1
95,477	+		GFF3893	0.80	-0.7
95,477	+		GFF3893	0.80	-1.5
95,478	-		GFF3893	0.80	+0.0
95,478	-		GFF3893	0.80	-0.2
95,478	-		GFF3893	0.80	+0.1
95,478	-		GFF3893	0.80	+0.3
95,561	+		GFF3893	0.81	+0.6
95,561	+		GFF3893	0.81	+0.1
95,561	+		GFF3893	0.81	+0.2
95,562	-		GFF3893	0.81	-0.1
95,913	-		GFF3893	0.88	+0.9
95,913	-		GFF3893	0.88	-0.2
95,913	-		GFF3893	0.88	+0.7
95,913	-		GFF3893	0.88	+0.7
95,934	-		GFF3893	0.89	+0.0
95,934	-		GFF3893	0.89	-0.1
95,934	-		GFF3893	0.89	-0.6
95,934	-		GFF3893	0.89	+1.2
95,934	-		GFF3893	0.89	+0.1
95,934	-		GFF3893	0.89	-0.2
95,934	-		GFF3893	0.89	-0.6
95,954	+		GFF3893	0.89	-0.5
95,954	+		GFF3893	0.89	+0.1
95,954	+		GFF3893	0.89	+0.6
95,954	+		GFF3893	0.89	-1.2
95,954	+		GFF3893	0.89	+0.6
95,954	+		GFF3893	0.89	+0.3
95,954	+		GFF3893	0.89	+0.2
95,954	+		GFF3893	0.89	+0.3
95,990	+		GFF3893	0.90	+0.6
95,990	+		GFF3893	0.90	-0.3
97,331	-		GFF3894	0.57	-1.2