Strain Fitness in Variovorax sp. SCN45 around GFF3783

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3781 and GFF3782 are separated by 86 nucleotidesGFF3782 and GFF3783 are separated by 15 nucleotidesGFF3783 and GFF3784 are separated by 142 nucleotides GFF3781 - Transcriptional regulator, AcrR family, at 273,260 to 273,895 GFF3781 GFF3782 - hypothetical protein, at 273,982 to 274,767 GFF3782 GFF3783 - bifunctional P-450:NADPH-P450 reductase 1, at 274,783 to 278,007 GFF3783 GFF3784 - ABC transporter, substrate-binding protein RSc1750, at 278,150 to 279,406 GFF3784 Position (kb) 274 275 276 277 278 279Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 273.812 kb on + strand, within GFF3781at 273.812 kb on + strand, within GFF3781at 273.813 kb on - strand, within GFF3781at 273.813 kb on - strand, within GFF3781at 273.836 kb on + strandat 273.837 kb on - strandat 273.837 kb on - strandat 273.837 kb on - strandat 273.860 kb on + strandat 273.860 kb on + strandat 273.860 kb on + strandat 273.860 kb on + strandat 273.860 kb on + strandat 273.861 kb on - strandat 273.861 kb on - strandat 273.861 kb on - strandat 273.870 kb on - strandat 273.884 kb on + strandat 273.884 kb on + strandat 273.884 kb on + strandat 273.885 kb on - strandat 273.885 kb on - strandat 273.885 kb on - strandat 273.885 kb on - strandat 273.893 kb on + strandat 273.894 kb on - strandat 274.192 kb on + strand, within GFF3782at 274.210 kb on + strand, within GFF3782at 274.351 kb on + strand, within GFF3782at 274.352 kb on - strand, within GFF3782at 274.376 kb on - strand, within GFF3782at 274.376 kb on - strand, within GFF3782at 274.376 kb on - strand, within GFF3782at 274.456 kb on + strand, within GFF3782at 274.456 kb on + strand, within GFF3782at 274.457 kb on - strand, within GFF3782at 274.585 kb on + strand, within GFF3782at 274.663 kb on + strand, within GFF3782at 274.664 kb on - strand, within GFF3782at 274.741 kb on + strandat 274.811 kb on + strandat 274.811 kb on + strandat 274.812 kb on - strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.931 kb on + strandat 274.932 kb on - strandat 274.932 kb on - strandat 274.932 kb on - strandat 274.932 kb on - strandat 274.932 kb on - strandat 274.932 kb on - strandat 274.932 kb on - strandat 275.001 kb on - strandat 275.001 kb on - strandat 275.035 kb on - strandat 275.084 kb on + strandat 275.435 kb on + strand, within GFF3783at 275.555 kb on + strand, within GFF3783at 275.555 kb on + strand, within GFF3783at 275.555 kb on + strand, within GFF3783at 275.555 kb on + strand, within GFF3783at 275.555 kb on + strand, within GFF3783at 275.555 kb on + strand, within GFF3783at 275.556 kb on - strand, within GFF3783at 275.556 kb on - strand, within GFF3783at 275.556 kb on - strand, within GFF3783at 275.556 kb on - strand, within GFF3783at 275.627 kb on + strand, within GFF3783at 275.628 kb on - strand, within GFF3783at 275.681 kb on + strand, within GFF3783at 275.681 kb on + strand, within GFF3783at 276.026 kb on + strand, within GFF3783at 276.224 kb on + strand, within GFF3783at 276.224 kb on + strand, within GFF3783at 276.224 kb on + strand, within GFF3783at 276.225 kb on - strand, within GFF3783at 276.347 kb on + strand, within GFF3783at 276.348 kb on - strand, within GFF3783at 276.689 kb on + strand, within GFF3783at 276.689 kb on + strand, within GFF3783at 276.689 kb on + strand, within GFF3783at 276.690 kb on - strand, within GFF3783at 276.947 kb on + strand, within GFF3783at 276.947 kb on + strand, within GFF3783at 276.948 kb on - strand, within GFF3783at 276.948 kb on - strand, within GFF3783at 276.948 kb on - strand, within GFF3783at 276.948 kb on - strand, within GFF3783at 276.948 kb on - strand, within GFF3783at 277.043 kb on + strand, within GFF3783at 277.043 kb on + strand, within GFF3783at 277.043 kb on + strand, within GFF3783at 277.044 kb on - strand, within GFF3783at 277.068 kb on - strand, within GFF3783at 277.157 kb on + strand, within GFF3783at 277.158 kb on - strand, within GFF3783at 277.158 kb on - strand, within GFF3783at 277.283 kb on + strand, within GFF3783at 277.284 kb on - strand, within GFF3783at 277.284 kb on - strand, within GFF3783at 277.284 kb on - strand, within GFF3783at 277.284 kb on - strand, within GFF3783at 277.367 kb on + strand, within GFF3783at 277.367 kb on + strand, within GFF3783at 277.367 kb on + strand, within GFF3783at 277.368 kb on - strand, within GFF3783at 277.368 kb on - strand, within GFF3783at 277.652 kb on + strand, within GFF3783at 277.653 kb on - strand, within GFF3783at 277.653 kb on - strand, within GFF3783at 277.653 kb on - strand, within GFF3783at 277.874 kb on + strandat 277.874 kb on + strandat 277.874 kb on + strandat 277.874 kb on + strandat 277.875 kb on - strandat 278.045 kb on - strandat 278.057 kb on - strandat 278.067 kb on - strandat 278.202 kb on + strandat 278.203 kb on - strandat 278.203 kb on - strandat 278.203 kb on - strandat 278.484 kb on + strand, within GFF3784at 278.484 kb on + strand, within GFF3784at 278.484 kb on + strand, within GFF3784at 278.484 kb on + strand, within GFF3784at 278.485 kb on - strand, within GFF3784at 278.485 kb on - strand, within GFF3784at 278.623 kb on - strand, within GFF3784at 278.635 kb on - strand, within GFF3784at 278.733 kb on + strand, within GFF3784at 278.733 kb on + strand, within GFF3784at 278.826 kb on + strand, within GFF3784at 278.826 kb on + strand, within GFF3784at 278.827 kb on - strand, within GFF3784at 278.853 kb on + strand, within GFF3784at 278.853 kb on + strand, within GFF3784at 278.853 kb on + strand, within GFF3784at 278.853 kb on + strand, within GFF3784at 278.854 kb on - strand, within GFF3784at 278.854 kb on - strand, within GFF3784at 278.854 kb on - strand, within GFF3784at 278.854 kb on - strand, within GFF3784at 278.871 kb on + strand, within GFF3784at 278.871 kb on + strand, within GFF3784at 278.871 kb on + strand, within GFF3784at 278.871 kb on + strand, within GFF3784at 278.872 kb on - strand, within GFF3784at 278.872 kb on - strand, within GFF3784at 278.905 kb on - strand, within GFF3784at 278.905 kb on - strand, within GFF3784at 278.905 kb on - strand, within GFF3784at 278.905 kb on - strand, within GFF3784

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
273,812 + GFF3781 0.87 -0.7
273,812 + GFF3781 0.87 -1.1
273,813 - GFF3781 0.87 -1.2
273,813 - GFF3781 0.87 +0.9
273,836 + -1.6
273,837 - -0.5
273,837 - +1.1
273,837 - -1.3
273,860 + +0.5
273,860 + -0.0
273,860 + -1.2
273,860 + -1.6
273,860 + -2.1
273,861 - +0.1
273,861 - -0.9
273,861 - -2.8
273,870 - -0.0
273,884 + -0.4
273,884 + -0.7
273,884 + -0.9
273,885 - +0.1
273,885 - +0.4
273,885 - +0.5
273,885 - -0.4
273,893 + -0.3
273,894 - -0.4
274,192 + GFF3782 0.27 +0.1
274,210 + GFF3782 0.29 +1.4
274,351 + GFF3782 0.47 -0.1
274,352 - GFF3782 0.47 -0.1
274,376 - GFF3782 0.50 -0.1
274,376 - GFF3782 0.50 -0.3
274,376 - GFF3782 0.50 +0.8
274,456 + GFF3782 0.60 -0.5
274,456 + GFF3782 0.60 -0.0
274,457 - GFF3782 0.60 -1.1
274,585 + GFF3782 0.77 -1.1
274,663 + GFF3782 0.87 -0.7
274,664 - GFF3782 0.87 +0.2
274,741 + -0.7
274,811 + -0.8
274,811 + +1.0
274,812 - +0.1
274,931 + -0.8
274,931 + +0.0
274,931 + -1.6
274,931 + -0.1
274,931 + -0.4
274,931 + -0.1
274,931 + -1.1
274,931 + -0.8
274,932 - -0.7
274,932 - -0.1
274,932 - -0.5
274,932 - -0.5
274,932 - -1.1
274,932 - +0.2
274,932 - -0.0
275,001 - +0.6
275,001 - +0.2
275,035 - -0.7
275,084 + -0.3
275,435 + GFF3783 0.20 -0.7
275,555 + GFF3783 0.24 +0.1
275,555 + GFF3783 0.24 -0.9
275,555 + GFF3783 0.24 -0.5
275,555 + GFF3783 0.24 +1.5
275,555 + GFF3783 0.24 -0.1
275,555 + GFF3783 0.24 -0.1
275,556 - GFF3783 0.24 -0.6
275,556 - GFF3783 0.24 -0.8
275,556 - GFF3783 0.24 -0.3
275,556 - GFF3783 0.24 -1.4
275,627 + GFF3783 0.26 +0.6
275,628 - GFF3783 0.26 -0.8
275,681 + GFF3783 0.28 -0.2
275,681 + GFF3783 0.28 -1.1
276,026 + GFF3783 0.39 -1.0
276,224 + GFF3783 0.45 -0.2
276,224 + GFF3783 0.45 +0.6
276,224 + GFF3783 0.45 -0.4
276,225 - GFF3783 0.45 -1.1
276,347 + GFF3783 0.48 +0.6
276,348 - GFF3783 0.49 -0.8
276,689 + GFF3783 0.59 +1.2
276,689 + GFF3783 0.59 -0.9
276,689 + GFF3783 0.59 -0.6
276,690 - GFF3783 0.59 -0.9
276,947 + GFF3783 0.67 +0.2
276,947 + GFF3783 0.67 -0.5
276,948 - GFF3783 0.67 -0.9
276,948 - GFF3783 0.67 -0.2
276,948 - GFF3783 0.67 -0.4
276,948 - GFF3783 0.67 -0.8
276,948 - GFF3783 0.67 +1.2
277,043 + GFF3783 0.70 +1.1
277,043 + GFF3783 0.70 -1.0
277,043 + GFF3783 0.70 -0.7
277,044 - GFF3783 0.70 -0.0
277,068 - GFF3783 0.71 -1.3
277,157 + GFF3783 0.74 -0.1
277,158 - GFF3783 0.74 +0.2
277,158 - GFF3783 0.74 -0.9
277,283 + GFF3783 0.78 -0.8
277,284 - GFF3783 0.78 +0.5
277,284 - GFF3783 0.78 -0.6
277,284 - GFF3783 0.78 -1.3
277,284 - GFF3783 0.78 -0.9
277,367 + GFF3783 0.80 +0.0
277,367 + GFF3783 0.80 +0.3
277,367 + GFF3783 0.80 -0.4
277,368 - GFF3783 0.80 -0.9
277,368 - GFF3783 0.80 -2.0
277,652 + GFF3783 0.89 -0.5
277,653 - GFF3783 0.89 +0.5
277,653 - GFF3783 0.89 -0.9
277,653 - GFF3783 0.89 -0.5
277,874 + +1.1
277,874 + -0.7
277,874 + +0.2
277,874 + +0.9
277,875 - -0.3
278,045 - +0.8
278,057 - -0.2
278,067 - -1.1
278,202 + -1.0
278,203 - +0.6
278,203 - -0.3
278,203 - +1.2
278,484 + GFF3784 0.27 -0.2
278,484 + GFF3784 0.27 -1.2
278,484 + GFF3784 0.27 -0.7
278,484 + GFF3784 0.27 -0.3
278,485 - GFF3784 0.27 -0.3
278,485 - GFF3784 0.27 -0.5
278,623 - GFF3784 0.38 +0.6
278,635 - GFF3784 0.39 -0.5
278,733 + GFF3784 0.46 +2.2
278,733 + GFF3784 0.46 +2.2
278,826 + GFF3784 0.54 -0.8
278,826 + GFF3784 0.54 +0.1
278,827 - GFF3784 0.54 -0.4
278,853 + GFF3784 0.56 -0.6
278,853 + GFF3784 0.56 -0.1
278,853 + GFF3784 0.56 -0.8
278,853 + GFF3784 0.56 -0.0
278,854 - GFF3784 0.56 +0.7
278,854 - GFF3784 0.56 -0.9
278,854 - GFF3784 0.56 +0.4
278,854 - GFF3784 0.56 -0.8
278,871 + GFF3784 0.57 +0.6
278,871 + GFF3784 0.57 +2.5
278,871 + GFF3784 0.57 -0.8
278,871 + GFF3784 0.57 -0.8
278,872 - GFF3784 0.57 -0.0
278,872 - GFF3784 0.57 +1.0
278,905 - GFF3784 0.60 -0.3
278,905 - GFF3784 0.60 -1.4
278,905 - GFF3784 0.60 +0.1
278,905 - GFF3784 0.60 -0.5

Or see this region's nucleotide sequence