Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3624 and GFF3625 are separated by 9 nucleotides GFF3625 and GFF3626 are separated by 36 nucleotides GFF3626 and GFF3627 are separated by 40 nucleotides
GFF3624 - Putative transmembrane protein, at 135,795 to 136,952
GFF3624
GFF3625 - Ferredoxin, 2Fe-2S, at 136,962 to 137,315
GFF3625
GFF3626 - Hydrolase, alpha/beta fold family, at 137,352 to 137,984
GFF3626
GFF3627 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 138,025 to 139,194
GFF3627
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.993 kb on - strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.152 kb on + strand, within GFF3624 at 136.506 kb on + strand, within GFF3624 at 136.507 kb on - strand, within GFF3624 at 136.507 kb on - strand, within GFF3624 at 136.507 kb on - strand, within GFF3624 at 136.507 kb on - strand, within GFF3624 at 136.507 kb on - strand, within GFF3624 at 136.602 kb on + strand, within GFF3624 at 136.602 kb on + strand, within GFF3624 at 136.602 kb on + strand, within GFF3624 at 136.602 kb on + strand, within GFF3624 at 136.603 kb on - strand, within GFF3624 at 136.603 kb on - strand, within GFF3624 at 136.603 kb on - strand, within GFF3624 at 136.776 kb on + strand, within GFF3624 at 136.777 kb on - strand, within GFF3624 at 136.777 kb on - strand, within GFF3624 at 136.777 kb on - strand, within GFF3624 at 136.777 kb on - strand, within GFF3624 at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.885 kb on + strand at 136.885 kb on + strand at 136.886 kb on - strand at 136.950 kb on + strand at 136.950 kb on + strand at 136.950 kb on + strand at 136.951 kb on - strand at 136.951 kb on - strand at 136.951 kb on - strand at 136.995 kb on + strand at 136.995 kb on + strand at 136.995 kb on + strand at 136.995 kb on + strand at 136.996 kb on - strand at 136.996 kb on - strand at 136.998 kb on + strand, within GFF3625 at 136.998 kb on + strand, within GFF3625 at 136.998 kb on + strand, within GFF3625 at 136.999 kb on - strand, within GFF3625 at 136.999 kb on - strand, within GFF3625 at 136.999 kb on - strand, within GFF3625 at 137.193 kb on + strand, within GFF3625 at 137.193 kb on + strand, within GFF3625 at 137.193 kb on + strand, within GFF3625 at 137.193 kb on + strand, within GFF3625 at 137.193 kb on + strand, within GFF3625 at 137.193 kb on + strand, within GFF3625 at 137.194 kb on - strand, within GFF3625 at 137.211 kb on + strand, within GFF3625 at 137.211 kb on + strand, within GFF3625 at 137.211 kb on + strand, within GFF3625 at 137.212 kb on - strand, within GFF3625 at 137.212 kb on - strand, within GFF3625 at 137.340 kb on + strand at 137.340 kb on + strand at 137.340 kb on + strand at 137.340 kb on + strand at 137.340 kb on + strand at 137.340 kb on + strand at 137.341 kb on - strand at 137.341 kb on - strand at 137.341 kb on - strand at 137.341 kb on - strand at 137.341 kb on - strand at 137.341 kb on - strand at 137.341 kb on - strand at 138.063 kb on + strand at 138.064 kb on - strand at 138.064 kb on - strand at 138.136 kb on + strand at 138.136 kb on + strand at 138.136 kb on + strand at 138.136 kb on + strand at 138.136 kb on + strand at 138.136 kb on + strand at 138.136 kb on + strand at 138.136 kb on + strand at 138.136 kb on + strand at 138.137 kb on - strand at 138.137 kb on - strand at 138.137 kb on - strand at 138.137 kb on - strand at 138.137 kb on - strand at 138.137 kb on - strand at 138.137 kb on - strand at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.232 kb on + strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627 at 138.233 kb on - strand, within GFF3627
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 135,990 + GFF3624 0.17 -2.2 135,990 + GFF3624 0.17 +2.5 135,990 + GFF3624 0.17 +0.3 135,990 + GFF3624 0.17 -2.2 135,990 + GFF3624 0.17 +2.2 135,990 + GFF3624 0.17 +0.4 135,990 + GFF3624 0.17 +4.2 135,990 + GFF3624 0.17 +2.2 135,990 + GFF3624 0.17 -0.7 135,990 + GFF3624 0.17 +0.5 135,990 + GFF3624 0.17 -0.8 135,991 - GFF3624 0.17 -0.4 135,991 - GFF3624 0.17 -0.6 135,991 - GFF3624 0.17 -0.5 135,991 - GFF3624 0.17 -1.6 135,991 - GFF3624 0.17 -0.1 135,991 - GFF3624 0.17 +0.2 135,991 - GFF3624 0.17 -0.0 135,991 - GFF3624 0.17 +0.7 135,991 - GFF3624 0.17 -0.5 135,991 - GFF3624 0.17 +1.2 135,991 - GFF3624 0.17 +1.3 135,991 - GFF3624 0.17 -2.6 135,991 - GFF3624 0.17 +0.6 135,991 - GFF3624 0.17 -2.1 135,991 - GFF3624 0.17 +1.1 135,991 - GFF3624 0.17 +0.2 135,991 - GFF3624 0.17 -1.0 135,993 - GFF3624 0.17 -1.7 136,122 + GFF3624 0.28 +1.2 136,122 + GFF3624 0.28 +0.2 136,122 + GFF3624 0.28 +0.6 136,122 + GFF3624 0.28 +1.1 136,122 + GFF3624 0.28 +1.5 136,122 + GFF3624 0.28 +0.3 136,122 + GFF3624 0.28 +0.6 136,122 + GFF3624 0.28 +0.6 136,122 + GFF3624 0.28 -1.1 136,123 - GFF3624 0.28 -0.6 136,123 - GFF3624 0.28 -0.5 136,123 - GFF3624 0.28 -0.4 136,123 - GFF3624 0.28 +2.8 136,123 - GFF3624 0.28 -0.9 136,123 - GFF3624 0.28 +0.0 136,123 - GFF3624 0.28 +0.0 136,123 - GFF3624 0.28 -0.6 136,123 - GFF3624 0.28 -0.1 136,152 + GFF3624 0.31 +1.2 136,506 + GFF3624 0.61 -1.8 136,507 - GFF3624 0.61 -0.1 136,507 - GFF3624 0.61 -0.7 136,507 - GFF3624 0.61 -0.4 136,507 - GFF3624 0.61 -2.8 136,507 - GFF3624 0.61 -1.0 136,602 + GFF3624 0.70 -0.6 136,602 + GFF3624 0.70 -0.3 136,602 + GFF3624 0.70 -1.5 136,602 + GFF3624 0.70 +0.5 136,603 - GFF3624 0.70 -1.5 136,603 - GFF3624 0.70 +0.2 136,603 - GFF3624 0.70 +0.0 136,776 + GFF3624 0.85 +1.2 136,777 - GFF3624 0.85 -0.3 136,777 - GFF3624 0.85 +1.2 136,777 - GFF3624 0.85 -0.7 136,777 - GFF3624 0.85 -0.2 136,878 + +0.5 136,878 + -0.7 136,878 + -0.2 136,878 + +1.2 136,878 + -2.0 136,878 + -1.6 136,878 + +2.2 136,878 + -0.2 136,878 + +1.8 136,878 + -1.8 136,878 + +0.7 136,878 + -0.4 136,878 + +1.5 136,878 + +0.2 136,879 - -1.4 136,879 - -0.2 136,879 - -0.3 136,879 - -0.2 136,879 - -0.1 136,879 - -0.7 136,879 - -0.6 136,879 - +0.6 136,879 - -1.2 136,879 - -0.0 136,879 - -0.9 136,879 - -0.2 136,879 - -0.7 136,879 - -0.6 136,879 - -0.8 136,879 - -0.6 136,879 - +0.1 136,879 - -1.0 136,879 - -0.7 136,885 + -0.7 136,885 + -0.0 136,886 - -0.5 136,950 + +1.5 136,950 + -0.6 136,950 + -0.5 136,951 - -0.7 136,951 - -1.5 136,951 - -1.7 136,995 + -0.4 136,995 + -0.4 136,995 + +0.2 136,995 + -0.1 136,996 - +0.3 136,996 - +1.2 136,998 + GFF3625 0.10 -0.4 136,998 + GFF3625 0.10 -0.6 136,998 + GFF3625 0.10 +0.5 136,999 - GFF3625 0.10 -2.0 136,999 - GFF3625 0.10 -0.4 136,999 - GFF3625 0.10 -1.1 137,193 + GFF3625 0.65 -0.5 137,193 + GFF3625 0.65 -0.3 137,193 + GFF3625 0.65 -0.9 137,193 + GFF3625 0.65 -1.6 137,193 + GFF3625 0.65 -0.6 137,193 + GFF3625 0.65 -1.1 137,194 - GFF3625 0.66 -0.5 137,211 + GFF3625 0.70 -0.4 137,211 + GFF3625 0.70 +0.5 137,211 + GFF3625 0.70 -1.2 137,212 - GFF3625 0.71 -0.5 137,212 - GFF3625 0.71 -0.2 137,340 + +0.2 137,340 + -0.6 137,340 + -0.5 137,340 + +0.1 137,340 + +1.0 137,340 + -0.3 137,341 - -0.4 137,341 - -1.3 137,341 - +1.2 137,341 - +0.5 137,341 - -1.2 137,341 - +0.5 137,341 - -1.0 138,063 + -0.3 138,064 - -1.9 138,064 - -1.3 138,136 + -1.0 138,136 + +2.2 138,136 + -0.6 138,136 + +1.6 138,136 + -0.2 138,136 + -0.9 138,136 + -0.5 138,136 + +0.5 138,136 + -0.1 138,137 - -1.7 138,137 - -0.1 138,137 - -0.4 138,137 - -0.6 138,137 - +0.1 138,137 - +1.2 138,137 - -0.2 138,232 + GFF3627 0.18 -1.2 138,232 + GFF3627 0.18 -1.6 138,232 + GFF3627 0.18 -1.0 138,232 + GFF3627 0.18 -0.5 138,232 + GFF3627 0.18 +0.2 138,232 + GFF3627 0.18 -1.3 138,232 + GFF3627 0.18 +0.2 138,232 + GFF3627 0.18 -0.3 138,232 + GFF3627 0.18 -0.4 138,232 + GFF3627 0.18 +0.2 138,232 + GFF3627 0.18 -0.7 138,232 + GFF3627 0.18 +0.5 138,232 + GFF3627 0.18 +0.2 138,232 + GFF3627 0.18 +0.8 138,232 + GFF3627 0.18 -1.5 138,232 + GFF3627 0.18 +1.5 138,232 + GFF3627 0.18 +1.5 138,232 + GFF3627 0.18 -0.6 138,232 + GFF3627 0.18 +0.6 138,232 + GFF3627 0.18 +0.2 138,232 + GFF3627 0.18 -2.3 138,232 + GFF3627 0.18 -0.5 138,232 + GFF3627 0.18 +0.5 138,232 + GFF3627 0.18 +0.2 138,232 + GFF3627 0.18 -0.1 138,233 - GFF3627 0.18 -1.6 138,233 - GFF3627 0.18 +1.5 138,233 - GFF3627 0.18 -1.3 138,233 - GFF3627 0.18 -0.2 138,233 - GFF3627 0.18 -0.0 138,233 - GFF3627 0.18 +0.1 138,233 - GFF3627 0.18 +0.3 138,233 - GFF3627 0.18 -0.2 138,233 - GFF3627 0.18 -0.5 138,233 - GFF3627 0.18 -0.4 138,233 - GFF3627 0.18 -2.4 138,233 - GFF3627 0.18 +0.2 138,233 - GFF3627 0.18 -0.7 138,233 - GFF3627 0.18 -1.9 138,233 - GFF3627 0.18 -0.7 138,233 - GFF3627 0.18 +1.2 138,233 - GFF3627 0.18 +0.2 138,233 - GFF3627 0.18 -1.2 138,233 - GFF3627 0.18 +1.6 138,233 - GFF3627 0.18 -1.7 138,233 - GFF3627 0.18 -0.2 138,233 - GFF3627 0.18 +0.2 138,233 - GFF3627 0.18 -0.3 138,233 - GFF3627 0.18 -0.4 138,233 - GFF3627 0.18 -0.9 138,233 - GFF3627 0.18 -0.5 138,233 - GFF3627 0.18 -0.7 138,233 - GFF3627 0.18 -0.4
Or see this region's nucleotide sequence