Strain Fitness in Variovorax sp. SCN45 around GFF3506

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
8,863	+		GFF3504	0.61	-0.3
8,863	+		GFF3504	0.61	-0.9
8,905	+		GFF3504	0.65	+0.1
8,905	+		GFF3504	0.65	-0.1
8,905	+		GFF3504	0.65	+0.0
8,905	+		GFF3504	0.65	-1.4
8,905	+		GFF3504	0.65	+0.1
8,905	+		GFF3504	0.65	-0.4
8,906	-		GFF3504	0.65	-0.1
8,906	-		GFF3504	0.65	-0.5
8,906	-		GFF3504	0.65	-0.8
8,906	-		GFF3504	0.65	+2.8
8,906	-		GFF3504	0.65	-1.0
8,920	+		GFF3504	0.67	-0.8
8,920	+		GFF3504	0.67	+0.4
8,921	-		GFF3504	0.67	+0.6
8,921	-		GFF3504	0.67	+0.0
8,971	+		GFF3504	0.72	-1.4
8,971	+		GFF3504	0.72	+0.1
8,971	+		GFF3504	0.72	+0.5
8,972	-		GFF3504	0.72	-0.0
8,972	-		GFF3504	0.72	+0.0
8,972	-		GFF3504	0.72	-0.1
9,516	+		GFF3505	0.17	+0.5
9,516	+		GFF3505	0.17	-0.3
9,517	-		GFF3505	0.18	+0.0
9,517	-		GFF3505	0.18	+2.2
9,517	-		GFF3505	0.18	-1.0
9,603	+		GFF3505	0.40	+0.3
9,603	+		GFF3505	0.40	-0.9
9,603	+		GFF3505	0.40	-0.3
9,717	+		GFF3505	0.71	-2.3
9,717	+		GFF3505	0.71	-0.1
9,717	+		GFF3505	0.71	-0.5
9,717	+		GFF3505	0.71	-1.2
9,717	+		GFF3505	0.71	-1.9
9,718	-		GFF3505	0.71	+1.9
9,939	-		GFF3506	0.16	-0.4
9,939	-		GFF3506	0.16	-0.1
9,939	-		GFF3506	0.16	+0.7
9,939	-		GFF3506	0.16	+0.3
9,939	-		GFF3506	0.16	-0.1
9,939	-		GFF3506	0.16	-1.3
10,119	-		GFF3506	0.47	+1.2
10,119	-		GFF3506	0.47	-0.3
10,119	-		GFF3506	0.47	-0.6
10,119	-		GFF3506	0.47	+0.3
10,236	-		GFF3506	0.67	-0.3
10,236	-		GFF3506	0.67	-0.0
10,236	-		GFF3506	0.67	+0.3
10,236	-		GFF3506	0.67	-0.1
10,236	-		GFF3506	0.67	-0.3
10,236	-		GFF3506	0.67	+0.2
10,236	-		GFF3506	0.67	-0.2
10,325	+		GFF3506	0.82	-0.2
10,352	+		GFF3506	0.87	+0.2
10,352	+		GFF3506	0.87	+0.4
10,352	+		GFF3506	0.87	+0.1
10,352	+		GFF3506	0.87	-0.4
10,400	+				+0.8
10,401	-				-1.0
10,435	+				-0.2
10,436	-				+0.2
10,436	-				-0.3
10,658	+		GFF3507	0.27	-0.7
10,716	+		GFF3507	0.35	+0.2
10,716	+		GFF3507	0.35	-0.9
10,716	+		GFF3507	0.35	+0.5
10,716	+		GFF3507	0.35	+0.5
10,717	-		GFF3507	0.36	+0.3
10,717	-		GFF3507	0.36	-0.6
10,717	-		GFF3507	0.36	-0.4
10,794	+		GFF3507	0.47	+1.1
10,794	+		GFF3507	0.47	+0.3
10,794	+		GFF3507	0.47	+0.1
10,794	+		GFF3507	0.47	+0.1
10,794	+		GFF3507	0.47	-0.1
10,794	+		GFF3507	0.47	-0.7
10,794	+		GFF3507	0.47	-0.3
10,795	-		GFF3507	0.47	+1.2
10,795	-		GFF3507	0.47	+0.2
10,795	-		GFF3507	0.47	-0.6
10,795	-		GFF3507	0.47	+0.0
10,795	-		GFF3507	0.47	-0.1
10,795	-		GFF3507	0.47	+1.6
11,282	+				-2.4
11,282	+				+0.4
11,283	-				-0.1
11,283	-				-2.3
11,283	-				+0.0
11,283	-				+0.0
11,357	+		GFF3508	0.11	-1.6
11,358	-		GFF3508	0.11	-0.3