Strain Fitness in Variovorax sp. SCN45 around GFF340

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF339 and GFF340 are separated by 0 nucleotidesGFF340 and GFF341 are separated by 19 nucleotides GFF339 - Exodeoxyribonuclease I (EC 3.1.11.1), at 371,956 to 373,395 GFF339 GFF340 - Cardiolipin synthase, bacterial type ClsA, at 373,396 to 374,949 GFF340 GFF341 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 374,969 to 377,290 GFF341 Position (kb) 373 374 375Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 372.980 kb on + strand, within GFF339at 373.043 kb on + strand, within GFF339at 373.044 kb on - strand, within GFF339at 373.109 kb on + strand, within GFF339at 373.110 kb on - strand, within GFF339at 373.245 kb on - strand, within GFF339at 373.245 kb on - strand, within GFF339at 373.245 kb on - strand, within GFF339at 373.265 kb on + strandat 373.265 kb on + strandat 373.265 kb on + strandat 373.266 kb on - strandat 373.266 kb on - strandat 373.266 kb on - strandat 373.367 kb on + strandat 373.538 kb on + strandat 373.538 kb on + strandat 373.538 kb on + strandat 373.538 kb on + strandat 373.538 kb on + strandat 373.538 kb on + strandat 373.538 kb on + strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.658 kb on + strand, within GFF340at 373.658 kb on + strand, within GFF340at 373.658 kb on + strand, within GFF340at 373.658 kb on + strand, within GFF340at 373.659 kb on - strand, within GFF340at 373.659 kb on - strand, within GFF340at 373.659 kb on - strand, within GFF340at 373.700 kb on + strand, within GFF340at 373.700 kb on + strand, within GFF340at 373.701 kb on - strand, within GFF340at 373.701 kb on - strand, within GFF340at 373.823 kb on + strand, within GFF340at 373.823 kb on + strand, within GFF340at 373.823 kb on + strand, within GFF340at 373.823 kb on + strand, within GFF340at 373.824 kb on - strand, within GFF340at 373.824 kb on - strand, within GFF340at 373.824 kb on - strand, within GFF340at 373.824 kb on - strand, within GFF340at 374.009 kb on + strand, within GFF340at 374.009 kb on + strand, within GFF340at 374.009 kb on + strand, within GFF340at 374.009 kb on + strand, within GFF340at 374.009 kb on + strand, within GFF340at 374.010 kb on - strand, within GFF340at 374.010 kb on - strand, within GFF340at 374.010 kb on - strand, within GFF340at 374.010 kb on - strand, within GFF340at 374.084 kb on + strand, within GFF340at 374.084 kb on + strand, within GFF340at 374.085 kb on - strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.187 kb on - strand, within GFF340at 374.187 kb on - strand, within GFF340at 374.187 kb on - strand, within GFF340at 374.286 kb on + strand, within GFF340at 374.320 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.396 kb on + strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.397 kb on - strand, within GFF340at 374.399 kb on + strand, within GFF340at 374.399 kb on + strand, within GFF340at 374.400 kb on - strand, within GFF340at 374.400 kb on - strand, within GFF340at 374.400 kb on - strand, within GFF340at 374.400 kb on - strand, within GFF340at 374.400 kb on - strand, within GFF340at 374.669 kb on + strand, within GFF340at 374.669 kb on + strand, within GFF340at 374.669 kb on + strand, within GFF340at 374.669 kb on + strand, within GFF340at 374.670 kb on - strand, within GFF340at 374.670 kb on - strand, within GFF340at 374.670 kb on - strand, within GFF340at 374.670 kb on - strand, within GFF340at 374.670 kb on - strand, within GFF340at 374.670 kb on - strand, within GFF340at 374.670 kb on - strand, within GFF340at 374.670 kb on - strand, within GFF340at 374.672 kb on + strand, within GFF340at 374.672 kb on + strand, within GFF340at 374.673 kb on - strand, within GFF340at 374.673 kb on - strand, within GFF340at 374.673 kb on - strand, within GFF340at 374.673 kb on - strand, within GFF340at 374.673 kb on - strand, within GFF340at 374.673 kb on - strand, within GFF340at 374.673 kb on - strand, within GFF340at 374.673 kb on - strand, within GFF340at 374.780 kb on + strand, within GFF340at 374.780 kb on + strand, within GFF340at 374.781 kb on - strand, within GFF340at 374.781 kb on - strand, within GFF340at 374.781 kb on - strand, within GFF340at 374.781 kb on - strand, within GFF340at 374.910 kb on + strandat 374.911 kb on - strandat 375.648 kb on + strand, within GFF341at 375.648 kb on + strand, within GFF341at 375.648 kb on + strand, within GFF341at 375.649 kb on - strand, within GFF341at 375.649 kb on - strand, within GFF341at 375.649 kb on - strand, within GFF341at 375.696 kb on + strand, within GFF341at 375.697 kb on - strand, within GFF341at 375.697 kb on - strand, within GFF341at 375.697 kb on - strand, within GFF341at 375.697 kb on - strand, within GFF341at 375.697 kb on - strand, within GFF341at 375.738 kb on + strand, within GFF341at 375.738 kb on + strand, within GFF341at 375.739 kb on - strand, within GFF341at 375.739 kb on - strand, within GFF341at 375.739 kb on - strand, within GFF341

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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372,980 + GFF339 0.71 -1.7
373,043 + GFF339 0.75 -0.2
373,044 - GFF339 0.76 -2.5
373,109 + GFF339 0.80 -1.8
373,110 - GFF339 0.80 -0.0
373,245 - GFF339 0.90 -0.2
373,245 - GFF339 0.90 -2.0
373,245 - GFF339 0.90 -1.1
373,265 + -1.6
373,265 + -2.0
373,265 + -1.2
373,266 - -0.0
373,266 - -1.0
373,266 - -0.7
373,367 + -1.2
373,538 + +1.3
373,538 + -0.7
373,538 + -1.5
373,538 + -0.7
373,538 + +0.2
373,538 + -0.2
373,538 + +0.3
373,539 - -0.6
373,539 - +0.1
373,539 - -0.4
373,539 - +0.1
373,539 - -1.7
373,539 - +0.7
373,539 - -0.9
373,539 - -1.5
373,658 + GFF340 0.17 -0.2
373,658 + GFF340 0.17 -0.4
373,658 + GFF340 0.17 +0.3
373,658 + GFF340 0.17 -0.9
373,659 - GFF340 0.17 +0.0
373,659 - GFF340 0.17 +0.3
373,659 - GFF340 0.17 +0.1
373,700 + GFF340 0.20 -0.7
373,700 + GFF340 0.20 -0.5
373,701 - GFF340 0.20 +1.1
373,701 - GFF340 0.20 -0.8
373,823 + GFF340 0.27 +0.1
373,823 + GFF340 0.27 -0.7
373,823 + GFF340 0.27 -1.4
373,823 + GFF340 0.27 -1.1
373,824 - GFF340 0.28 -0.7
373,824 - GFF340 0.28 -0.7
373,824 - GFF340 0.28 +0.3
373,824 - GFF340 0.28 +0.4
374,009 + GFF340 0.39 -0.0
374,009 + GFF340 0.39 +0.3
374,009 + GFF340 0.39 -1.9
374,009 + GFF340 0.39 -0.6
374,009 + GFF340 0.39 -0.1
374,010 - GFF340 0.40 -0.3
374,010 - GFF340 0.40 -1.4
374,010 - GFF340 0.40 -1.9
374,010 - GFF340 0.40 -0.4
374,084 + GFF340 0.44 +0.3
374,084 + GFF340 0.44 -0.6
374,085 - GFF340 0.44 -1.3
374,186 + GFF340 0.51 +0.1
374,186 + GFF340 0.51 +0.6
374,186 + GFF340 0.51 -0.1
374,186 + GFF340 0.51 -0.1
374,186 + GFF340 0.51 -0.1
374,186 + GFF340 0.51 -1.0
374,186 + GFF340 0.51 +0.8
374,186 + GFF340 0.51 -0.2
374,187 - GFF340 0.51 +0.3
374,187 - GFF340 0.51 -0.1
374,187 - GFF340 0.51 -0.3
374,286 + GFF340 0.57 -1.6
374,320 + GFF340 0.59 -0.2
374,396 + GFF340 0.64 +0.5
374,396 + GFF340 0.64 +0.7
374,396 + GFF340 0.64 -0.4
374,396 + GFF340 0.64 +0.1
374,396 + GFF340 0.64 -0.0
374,396 + GFF340 0.64 -1.0
374,396 + GFF340 0.64 -1.1
374,396 + GFF340 0.64 -0.2
374,396 + GFF340 0.64 -0.0
374,396 + GFF340 0.64 +1.7
374,396 + GFF340 0.64 -0.3
374,396 + GFF340 0.64 -0.8
374,396 + GFF340 0.64 -1.3
374,396 + GFF340 0.64 -1.4
374,396 + GFF340 0.64 -0.9
374,396 + GFF340 0.64 +0.2
374,396 + GFF340 0.64 +0.9
374,396 + GFF340 0.64 +0.8
374,397 - GFF340 0.64 -0.2
374,397 - GFF340 0.64 -1.9
374,397 - GFF340 0.64 -1.8
374,397 - GFF340 0.64 +0.3
374,397 - GFF340 0.64 -0.2
374,397 - GFF340 0.64 -0.0
374,397 - GFF340 0.64 -0.9
374,397 - GFF340 0.64 +1.0
374,397 - GFF340 0.64 +0.9
374,397 - GFF340 0.64 +0.6
374,397 - GFF340 0.64 -0.3
374,397 - GFF340 0.64 -1.2
374,397 - GFF340 0.64 -2.0
374,397 - GFF340 0.64 -0.9
374,397 - GFF340 0.64 +0.0
374,397 - GFF340 0.64 -0.7
374,399 + GFF340 0.65 +0.2
374,399 + GFF340 0.65 +0.4
374,400 - GFF340 0.65 -0.2
374,400 - GFF340 0.65 -0.1
374,400 - GFF340 0.65 +0.1
374,400 - GFF340 0.65 +2.2
374,400 - GFF340 0.65 -1.8
374,669 + GFF340 0.82 +1.6
374,669 + GFF340 0.82 -0.2
374,669 + GFF340 0.82 +0.5
374,669 + GFF340 0.82 +0.6
374,670 - GFF340 0.82 -2.2
374,670 - GFF340 0.82 -0.3
374,670 - GFF340 0.82 +0.1
374,670 - GFF340 0.82 -0.3
374,670 - GFF340 0.82 -0.5
374,670 - GFF340 0.82 -0.8
374,670 - GFF340 0.82 +0.3
374,670 - GFF340 0.82 +0.3
374,672 + GFF340 0.82 -2.7
374,672 + GFF340 0.82 -0.2
374,673 - GFF340 0.82 +1.0
374,673 - GFF340 0.82 +0.8
374,673 - GFF340 0.82 +1.0
374,673 - GFF340 0.82 -1.7
374,673 - GFF340 0.82 -0.6
374,673 - GFF340 0.82 +0.3
374,673 - GFF340 0.82 +0.2
374,673 - GFF340 0.82 +0.1
374,780 + GFF340 0.89 -0.8
374,780 + GFF340 0.89 -0.5
374,781 - GFF340 0.89 +1.6
374,781 - GFF340 0.89 -1.0
374,781 - GFF340 0.89 -0.3
374,781 - GFF340 0.89 -0.4
374,910 + +1.8
374,911 - -0.6
375,648 + GFF341 0.29 -1.6
375,648 + GFF341 0.29 +1.0
375,648 + GFF341 0.29 -3.1
375,649 - GFF341 0.29 +1.6
375,649 - GFF341 0.29 +0.3
375,649 - GFF341 0.29 -2.5
375,696 + GFF341 0.31 -0.3
375,697 - GFF341 0.31 +0.7
375,697 - GFF341 0.31 +1.6
375,697 - GFF341 0.31 -0.1
375,697 - GFF341 0.31 -0.0
375,697 - GFF341 0.31 +3.6
375,738 + GFF341 0.33 -0.4
375,738 + GFF341 0.33 -0.6
375,739 - GFF341 0.33 -0.5
375,739 - GFF341 0.33 -1.9
375,739 - GFF341 0.33 +0.8

Or see this region's nucleotide sequence