Strain Fitness in Variovorax sp. SCN45 around GFF3399

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3397 and GFF3398 overlap by 4 nucleotidesGFF3398 and GFF3399 are separated by 142 nucleotidesGFF3399 and GFF3400 are separated by 30 nucleotides GFF3397 - Benzoate ABC transporter, substrate-binding protein, at 219,681 to 220,853 GFF3397 GFF3398 - benzoate degradation ring-cleavage hydrolase, at 220,850 to 221,659 GFF3398 GFF3399 - Benzoate--CoA ligase (EC 6.2.1.25), at 221,802 to 223,349 GFF3399 GFF3400 - Benzaldehyde dehydrogenase, at 223,380 to 224,930 GFF3400 Position (kb) 221 222 223 224Strain fitness (log2 ratio) -2 -1 0 1 2at 221.014 kb on - strand, within GFF3398at 221.188 kb on - strand, within GFF3398at 221.292 kb on + strand, within GFF3398at 221.292 kb on + strand, within GFF3398at 221.292 kb on + strand, within GFF3398at 221.292 kb on + strand, within GFF3398at 221.293 kb on - strand, within GFF3398at 221.897 kb on - strandat 221.902 kb on + strandat 221.902 kb on + strandat 221.903 kb on - strandat 221.903 kb on - strandat 222.085 kb on + strand, within GFF3399at 222.085 kb on + strand, within GFF3399at 222.085 kb on + strand, within GFF3399at 222.085 kb on + strand, within GFF3399at 222.085 kb on + strand, within GFF3399at 222.086 kb on - strand, within GFF3399at 222.086 kb on - strand, within GFF3399at 222.086 kb on - strand, within GFF3399at 222.086 kb on - strand, within GFF3399at 222.086 kb on - strand, within GFF3399at 222.086 kb on - strand, within GFF3399at 222.086 kb on - strand, within GFF3399at 222.086 kb on - strand, within GFF3399at 222.086 kb on - strand, within GFF3399at 222.127 kb on + strand, within GFF3399at 222.127 kb on + strand, within GFF3399at 222.128 kb on - strand, within GFF3399at 222.137 kb on - strand, within GFF3399at 222.157 kb on + strand, within GFF3399at 222.158 kb on - strand, within GFF3399at 222.158 kb on - strand, within GFF3399at 222.223 kb on + strand, within GFF3399at 222.224 kb on - strand, within GFF3399at 222.253 kb on + strand, within GFF3399at 222.253 kb on + strand, within GFF3399at 222.253 kb on + strand, within GFF3399at 222.253 kb on + strand, within GFF3399at 222.254 kb on - strand, within GFF3399at 222.254 kb on - strand, within GFF3399at 222.694 kb on + strand, within GFF3399at 222.694 kb on + strand, within GFF3399at 222.694 kb on + strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.829 kb on + strand, within GFF3399at 222.829 kb on + strand, within GFF3399at 222.830 kb on - strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.063 kb on + strand, within GFF3399at 223.063 kb on + strand, within GFF3399at 223.064 kb on - strand, within GFF3399at 223.114 kb on + strand, within GFF3399at 223.114 kb on + strand, within GFF3399at 223.114 kb on + strand, within GFF3399at 223.114 kb on + strand, within GFF3399at 223.115 kb on - strand, within GFF3399at 223.115 kb on - strand, within GFF3399at 223.115 kb on - strand, within GFF3399at 223.115 kb on - strand, within GFF3399at 223.246 kb on + strandat 223.246 kb on + strandat 223.247 kb on - strandat 223.273 kb on + strandat 223.381 kb on + strandat 223.382 kb on - strandat 223.382 kb on - strandat 223.439 kb on - strandat 223.439 kb on - strandat 223.633 kb on + strand, within GFF3400at 223.634 kb on - strand, within GFF3400at 223.634 kb on - strand, within GFF3400at 223.634 kb on - strand, within GFF3400at 223.634 kb on - strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.636 kb on - strand, within GFF3400at 223.636 kb on - strand, within GFF3400at 223.636 kb on - strand, within GFF3400at 223.636 kb on - strand, within GFF3400at 223.636 kb on - strand, within GFF3400at 223.636 kb on - strand, within GFF3400at 224.005 kb on + strand, within GFF3400at 224.005 kb on + strand, within GFF3400at 224.006 kb on - strand, within GFF3400at 224.006 kb on - strand, within GFF3400at 224.295 kb on + strand, within GFF3400at 224.295 kb on + strand, within GFF3400at 224.296 kb on - strand, within GFF3400at 224.296 kb on - strand, within GFF3400

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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221,014 - GFF3398 0.20 -1.0
221,188 - GFF3398 0.42 -0.3
221,292 + GFF3398 0.55 +0.6
221,292 + GFF3398 0.55 -0.2
221,292 + GFF3398 0.55 +0.9
221,292 + GFF3398 0.55 -0.5
221,293 - GFF3398 0.55 -0.6
221,897 - -0.7
221,902 + +0.2
221,902 + -0.3
221,903 - +0.5
221,903 - -0.3
222,085 + GFF3399 0.18 +0.7
222,085 + GFF3399 0.18 -0.3
222,085 + GFF3399 0.18 +0.6
222,085 + GFF3399 0.18 +0.7
222,085 + GFF3399 0.18 +2.3
222,086 - GFF3399 0.18 -1.8
222,086 - GFF3399 0.18 -0.7
222,086 - GFF3399 0.18 -0.3
222,086 - GFF3399 0.18 -0.4
222,086 - GFF3399 0.18 -1.9
222,086 - GFF3399 0.18 -0.7
222,086 - GFF3399 0.18 +0.3
222,086 - GFF3399 0.18 -0.1
222,086 - GFF3399 0.18 +0.1
222,127 + GFF3399 0.21 -0.2
222,127 + GFF3399 0.21 -0.4
222,128 - GFF3399 0.21 -0.5
222,137 - GFF3399 0.22 +0.3
222,157 + GFF3399 0.23 -0.5
222,158 - GFF3399 0.23 +0.2
222,158 - GFF3399 0.23 -0.5
222,223 + GFF3399 0.27 +0.4
222,224 - GFF3399 0.27 -1.7
222,253 + GFF3399 0.29 -0.7
222,253 + GFF3399 0.29 -0.0
222,253 + GFF3399 0.29 -0.0
222,253 + GFF3399 0.29 -0.8
222,254 - GFF3399 0.29 -0.2
222,254 - GFF3399 0.29 -1.9
222,694 + GFF3399 0.58 +1.3
222,694 + GFF3399 0.58 +0.1
222,694 + GFF3399 0.58 -0.3
222,695 - GFF3399 0.58 -0.8
222,695 - GFF3399 0.58 +0.3
222,695 - GFF3399 0.58 -1.4
222,695 - GFF3399 0.58 +0.4
222,695 - GFF3399 0.58 -1.3
222,695 - GFF3399 0.58 -1.1
222,695 - GFF3399 0.58 +0.3
222,829 + GFF3399 0.66 +0.5
222,829 + GFF3399 0.66 -1.8
222,830 - GFF3399 0.66 +0.2
223,057 + GFF3399 0.81 -0.3
223,057 + GFF3399 0.81 +0.4
223,057 + GFF3399 0.81 -0.7
223,057 + GFF3399 0.81 -0.5
223,057 + GFF3399 0.81 -0.4
223,057 + GFF3399 0.81 -1.9
223,057 + GFF3399 0.81 +1.3
223,057 + GFF3399 0.81 +0.1
223,057 + GFF3399 0.81 -0.5
223,058 - GFF3399 0.81 -1.3
223,058 - GFF3399 0.81 +1.6
223,058 - GFF3399 0.81 +0.6
223,058 - GFF3399 0.81 +0.7
223,058 - GFF3399 0.81 -1.5
223,058 - GFF3399 0.81 +0.2
223,058 - GFF3399 0.81 +0.1
223,058 - GFF3399 0.81 +0.5
223,058 - GFF3399 0.81 -0.2
223,058 - GFF3399 0.81 +0.1
223,058 - GFF3399 0.81 -0.3
223,063 + GFF3399 0.81 -0.4
223,063 + GFF3399 0.81 +0.7
223,064 - GFF3399 0.82 +1.9
223,114 + GFF3399 0.85 -0.8
223,114 + GFF3399 0.85 -2.0
223,114 + GFF3399 0.85 -0.5
223,114 + GFF3399 0.85 -0.3
223,115 - GFF3399 0.85 -1.7
223,115 - GFF3399 0.85 -0.4
223,115 - GFF3399 0.85 +0.0
223,115 - GFF3399 0.85 +0.0
223,246 + -1.0
223,246 + -0.1
223,247 - +0.7
223,273 + +0.6
223,381 + +0.3
223,382 - +0.6
223,382 - -0.5
223,439 - -1.3
223,439 - -1.3
223,633 + GFF3400 0.16 -0.8
223,634 - GFF3400 0.16 -1.0
223,634 - GFF3400 0.16 +0.5
223,634 - GFF3400 0.16 -1.2
223,634 - GFF3400 0.16 -0.3
223,635 + GFF3400 0.16 -2.3
223,635 + GFF3400 0.16 -0.8
223,635 + GFF3400 0.16 -0.3
223,635 + GFF3400 0.16 +0.7
223,635 + GFF3400 0.16 -1.9
223,635 + GFF3400 0.16 -0.2
223,635 + GFF3400 0.16 +0.3
223,635 + GFF3400 0.16 -0.1
223,635 + GFF3400 0.16 +0.6
223,636 - GFF3400 0.17 -0.1
223,636 - GFF3400 0.17 +0.0
223,636 - GFF3400 0.17 -0.5
223,636 - GFF3400 0.17 -1.5
223,636 - GFF3400 0.17 +0.1
223,636 - GFF3400 0.17 -0.9
224,005 + GFF3400 0.40 -0.2
224,005 + GFF3400 0.40 -0.4
224,006 - GFF3400 0.40 +0.6
224,006 - GFF3400 0.40 -0.0
224,295 + GFF3400 0.59 -1.0
224,295 + GFF3400 0.59 -0.4
224,296 - GFF3400 0.59 -0.8
224,296 - GFF3400 0.59 -0.0

Or see this region's nucleotide sequence