Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3142 and GFF3143 are separated by 128 nucleotides GFF3143 and GFF3144 are separated by 49 nucleotides
GFF3142 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 573,207 to 576,818
GFF3142
GFF3143 - hypothetical protein, at 576,947 to 577,816
GFF3143
GFF3144 - hypothetical protein, at 577,866 to 579,218
GFF3144
Position (kb) 576
577
578 Strain fitness (log2 ratio) -1
0
1 at 576.232 kb on + strand, within GFF3142 at 576.232 kb on + strand, within GFF3142 at 576.232 kb on + strand, within GFF3142 at 576.232 kb on + strand, within GFF3142 at 576.233 kb on - strand, within GFF3142 at 576.256 kb on + strand, within GFF3142 at 576.256 kb on + strand, within GFF3142 at 576.454 kb on + strand, within GFF3142 at 576.913 kb on + strand at 576.914 kb on - strand at 577.021 kb on - strand at 577.038 kb on + strand, within GFF3143 at 577.101 kb on + strand, within GFF3143 at 577.102 kb on - strand, within GFF3143 at 577.102 kb on - strand, within GFF3143 at 577.147 kb on - strand, within GFF3143 at 577.218 kb on + strand, within GFF3143 at 577.219 kb on - strand, within GFF3143 at 577.263 kb on + strand, within GFF3143 at 577.263 kb on + strand, within GFF3143 at 577.264 kb on - strand, within GFF3143 at 577.324 kb on - strand, within GFF3143 at 577.324 kb on - strand, within GFF3143 at 577.443 kb on + strand, within GFF3143 at 577.519 kb on + strand, within GFF3143 at 577.519 kb on + strand, within GFF3143 at 577.519 kb on + strand, within GFF3143 at 577.602 kb on + strand, within GFF3143 at 577.602 kb on + strand, within GFF3143 at 577.602 kb on + strand, within GFF3143 at 577.602 kb on + strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.691 kb on + strand, within GFF3143 at 577.691 kb on + strand, within GFF3143 at 577.844 kb on + strand at 577.844 kb on + strand at 577.845 kb on - strand at 577.845 kb on - strand at 577.845 kb on - strand at 578.158 kb on + strand, within GFF3144 at 578.159 kb on - strand, within GFF3144 at 578.159 kb on - strand, within GFF3144
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 576,232 + GFF3142 0.84 +0.2 576,232 + GFF3142 0.84 +0.4 576,232 + GFF3142 0.84 +1.1 576,232 + GFF3142 0.84 -0.9 576,233 - GFF3142 0.84 -0.1 576,256 + GFF3142 0.84 -1.3 576,256 + GFF3142 0.84 -0.3 576,454 + GFF3142 0.90 +0.4 576,913 + -0.3 576,914 - -0.4 577,021 - -0.6 577,038 + GFF3143 0.10 -0.1 577,101 + GFF3143 0.18 -1.1 577,102 - GFF3143 0.18 -0.8 577,102 - GFF3143 0.18 -0.8 577,147 - GFF3143 0.23 -0.5 577,218 + GFF3143 0.31 -0.0 577,219 - GFF3143 0.31 +0.9 577,263 + GFF3143 0.36 -0.6 577,263 + GFF3143 0.36 -1.0 577,264 - GFF3143 0.36 +1.4 577,324 - GFF3143 0.43 -1.7 577,324 - GFF3143 0.43 -0.5 577,443 + GFF3143 0.57 -0.3 577,519 + GFF3143 0.66 -1.0 577,519 + GFF3143 0.66 -0.2 577,519 + GFF3143 0.66 -0.9 577,602 + GFF3143 0.75 +1.3 577,602 + GFF3143 0.75 -0.5 577,602 + GFF3143 0.75 -1.3 577,602 + GFF3143 0.75 -0.4 577,603 - GFF3143 0.75 +0.1 577,603 - GFF3143 0.75 +0.3 577,603 - GFF3143 0.75 +0.7 577,603 - GFF3143 0.75 -1.0 577,603 - GFF3143 0.75 -0.9 577,603 - GFF3143 0.75 -0.6 577,603 - GFF3143 0.75 +0.1 577,691 + GFF3143 0.86 -1.6 577,691 + GFF3143 0.86 +0.0 577,844 + -0.9 577,844 + -0.1 577,845 - -0.5 577,845 - -1.1 577,845 - -0.9 578,158 + GFF3144 0.22 +0.2 578,159 - GFF3144 0.22 -1.2 578,159 - GFF3144 0.22 -1.1
Or see this region's nucleotide sequence