Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2911 and GFF2912 are separated by 99 nucleotides GFF2912 and GFF2913 overlap by 4 nucleotides GFF2913 and GFF2914 overlap by 17 nucleotides
GFF2911 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 339,009 to 339,893
GFF2911
GFF2912 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 339,993 to 340,742
GFF2912
GFF2913 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 340,739 to 341,395
GFF2913
GFF2914 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 341,379 to 342,107
GFF2914
Position (kb) 339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 339.193 kb on + strand, within GFF2911 at 339.229 kb on + strand, within GFF2911 at 339.229 kb on + strand, within GFF2911 at 339.230 kb on - strand, within GFF2911 at 339.230 kb on - strand, within GFF2911 at 339.323 kb on - strand, within GFF2911 at 339.323 kb on - strand, within GFF2911 at 339.453 kb on - strand, within GFF2911 at 339.676 kb on + strand, within GFF2911 at 339.677 kb on - strand, within GFF2911 at 339.677 kb on - strand, within GFF2911 at 339.677 kb on - strand, within GFF2911 at 339.872 kb on + strand at 339.905 kb on + strand at 339.906 kb on - strand at 339.918 kb on - strand at 339.999 kb on + strand at 339.999 kb on + strand at 339.999 kb on + strand at 339.999 kb on + strand at 340.000 kb on - strand at 340.000 kb on - strand at 340.000 kb on - strand at 340.000 kb on - strand at 340.000 kb on - strand at 340.000 kb on - strand at 340.029 kb on + strand at 340.029 kb on + strand at 340.029 kb on + strand at 340.030 kb on - strand at 340.030 kb on - strand at 340.030 kb on - strand at 340.030 kb on - strand at 340.030 kb on - strand at 340.030 kb on - strand at 340.030 kb on - strand at 340.170 kb on + strand, within GFF2912 at 340.170 kb on + strand, within GFF2912 at 340.170 kb on + strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.171 kb on - strand, within GFF2912 at 340.222 kb on - strand, within GFF2912 at 340.222 kb on - strand, within GFF2912 at 340.222 kb on - strand, within GFF2912 at 340.302 kb on + strand, within GFF2912 at 340.434 kb on + strand, within GFF2912 at 340.434 kb on + strand, within GFF2912 at 340.435 kb on - strand, within GFF2912 at 340.563 kb on + strand, within GFF2912 at 340.563 kb on + strand, within GFF2912 at 340.563 kb on + strand, within GFF2912 at 340.563 kb on + strand, within GFF2912 at 340.563 kb on + strand, within GFF2912 at 340.563 kb on + strand, within GFF2912 at 340.564 kb on - strand, within GFF2912 at 340.564 kb on - strand, within GFF2912 at 340.584 kb on + strand, within GFF2912 at 340.585 kb on - strand, within GFF2912 at 340.635 kb on + strand, within GFF2912 at 340.635 kb on + strand, within GFF2912 at 340.635 kb on + strand, within GFF2912 at 340.635 kb on + strand, within GFF2912 at 340.635 kb on + strand, within GFF2912 at 340.775 kb on + strand at 340.775 kb on + strand at 340.775 kb on + strand at 340.776 kb on - strand at 340.776 kb on - strand at 340.776 kb on - strand at 340.776 kb on - strand at 340.776 kb on - strand at 340.907 kb on + strand, within GFF2913 at 340.908 kb on - strand, within GFF2913 at 340.908 kb on - strand, within GFF2913 at 340.908 kb on - strand, within GFF2913 at 340.908 kb on - strand, within GFF2913 at 340.958 kb on + strand, within GFF2913 at 340.959 kb on - strand, within GFF2913 at 341.027 kb on + strand, within GFF2913 at 341.027 kb on + strand, within GFF2913 at 341.028 kb on - strand, within GFF2913 at 341.028 kb on - strand, within GFF2913 at 341.028 kb on - strand, within GFF2913 at 341.321 kb on + strand, within GFF2913 at 341.322 kb on - strand, within GFF2913 at 341.410 kb on - strand at 341.411 kb on + strand at 341.411 kb on + strand at 341.411 kb on + strand at 341.412 kb on - strand at 341.412 kb on - strand at 341.412 kb on - strand at 341.643 kb on + strand, within GFF2914 at 341.644 kb on - strand, within GFF2914 at 341.644 kb on - strand, within GFF2914 at 341.644 kb on - strand, within GFF2914 at 341.644 kb on - strand, within GFF2914 at 341.644 kb on - strand, within GFF2914 at 341.644 kb on - strand, within GFF2914
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 339,193 + GFF2911 0.21 +0.4 339,229 + GFF2911 0.25 +0.8 339,229 + GFF2911 0.25 -1.6 339,230 - GFF2911 0.25 -0.5 339,230 - GFF2911 0.25 -2.2 339,323 - GFF2911 0.35 -0.7 339,323 - GFF2911 0.35 +0.0 339,453 - GFF2911 0.50 +0.9 339,676 + GFF2911 0.75 -3.0 339,677 - GFF2911 0.75 -1.5 339,677 - GFF2911 0.75 -1.5 339,677 - GFF2911 0.75 +0.2 339,872 + -0.2 339,905 + +0.5 339,906 - -0.1 339,918 - +1.1 339,999 + +0.9 339,999 + +1.5 339,999 + -0.4 339,999 + -0.7 340,000 - +0.1 340,000 - -0.3 340,000 - -0.5 340,000 - +0.9 340,000 - +0.6 340,000 - -1.0 340,029 + +1.6 340,029 + +0.8 340,029 + -1.3 340,030 - +0.4 340,030 - -0.7 340,030 - +0.7 340,030 - -0.1 340,030 - +0.5 340,030 - +0.8 340,030 - +0.0 340,170 + GFF2912 0.24 +0.5 340,170 + GFF2912 0.24 -0.7 340,170 + GFF2912 0.24 +0.9 340,171 - GFF2912 0.24 -0.2 340,171 - GFF2912 0.24 -0.0 340,171 - GFF2912 0.24 -0.4 340,171 - GFF2912 0.24 -1.1 340,171 - GFF2912 0.24 -0.5 340,171 - GFF2912 0.24 +0.7 340,171 - GFF2912 0.24 -0.9 340,222 - GFF2912 0.31 -0.6 340,222 - GFF2912 0.31 +0.9 340,222 - GFF2912 0.31 -1.6 340,302 + GFF2912 0.41 -1.3 340,434 + GFF2912 0.59 +0.3 340,434 + GFF2912 0.59 -0.1 340,435 - GFF2912 0.59 +1.4 340,563 + GFF2912 0.76 -1.2 340,563 + GFF2912 0.76 -0.4 340,563 + GFF2912 0.76 -0.4 340,563 + GFF2912 0.76 +0.4 340,563 + GFF2912 0.76 +0.3 340,563 + GFF2912 0.76 -0.3 340,564 - GFF2912 0.76 -0.9 340,564 - GFF2912 0.76 -1.5 340,584 + GFF2912 0.79 +0.0 340,585 - GFF2912 0.79 +0.1 340,635 + GFF2912 0.86 -0.0 340,635 + GFF2912 0.86 -0.7 340,635 + GFF2912 0.86 +0.7 340,635 + GFF2912 0.86 -0.9 340,635 + GFF2912 0.86 +0.6 340,775 + -0.2 340,775 + -0.6 340,775 + +0.7 340,776 - +1.7 340,776 - -0.3 340,776 - -0.6 340,776 - +0.0 340,776 - +1.4 340,907 + GFF2913 0.26 -0.9 340,908 - GFF2913 0.26 -0.9 340,908 - GFF2913 0.26 +0.4 340,908 - GFF2913 0.26 -0.2 340,908 - GFF2913 0.26 -1.2 340,958 + GFF2913 0.33 -0.1 340,959 - GFF2913 0.33 +1.8 341,027 + GFF2913 0.44 -0.6 341,027 + GFF2913 0.44 -1.4 341,028 - GFF2913 0.44 -1.5 341,028 - GFF2913 0.44 +0.4 341,028 - GFF2913 0.44 -0.3 341,321 + GFF2913 0.89 -0.8 341,322 - GFF2913 0.89 +0.6 341,410 - -0.6 341,411 + +1.9 341,411 + -1.9 341,411 + +0.7 341,412 - +0.2 341,412 - -0.2 341,412 - -1.3 341,643 + GFF2914 0.36 -1.0 341,644 - GFF2914 0.36 -0.1 341,644 - GFF2914 0.36 -0.5 341,644 - GFF2914 0.36 -0.3 341,644 - GFF2914 0.36 +0.9 341,644 - GFF2914 0.36 +0.5 341,644 - GFF2914 0.36 -1.6
Or see this region's nucleotide sequence