Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2606 and GFF2607 are separated by 19 nucleotides GFF2607 and GFF2608 overlap by 4 nucleotides GFF2608 and GFF2609 overlap by 8 nucleotides GFF2609 and GFF2610 overlap by 1 nucleotides
GFF2606 - Tripartite tricarboxylate transporter TctC family, at 11,467 to 12,483
GFF2606
GFF2607 - hypothetical protein, at 12,503 to 12,904
GFF2607
GFF2608 - Transcriptional regulator FrcR for fructose utilization, ROK family, at 12,901 to 14,124
GFF2608
GFF2609 - Fructose ABC transporter, ATP-binding component FrcA, at 14,117 to 14,914
GFF2609
GFF2610 - Fructose ABC transporter, permease component FrcC, at 14,914 to 15,873
GFF2610
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.268 kb on + strand, within GFF2606 at 12.268 kb on + strand, within GFF2606 at 12.269 kb on - strand, within GFF2606 at 12.269 kb on - strand, within GFF2606 at 12.346 kb on + strand, within GFF2606 at 12.346 kb on + strand, within GFF2606 at 12.346 kb on + strand, within GFF2606 at 12.376 kb on + strand, within GFF2606 at 12.376 kb on + strand, within GFF2606 at 12.377 kb on - strand, within GFF2606 at 12.377 kb on - strand, within GFF2606 at 12.412 kb on + strand at 12.412 kb on + strand at 12.412 kb on + strand at 12.413 kb on - strand at 12.527 kb on + strand at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 13.233 kb on - strand, within GFF2608 at 13.428 kb on + strand, within GFF2608 at 13.428 kb on + strand, within GFF2608 at 13.437 kb on - strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.748 kb on + strand, within GFF2608 at 13.749 kb on - strand, within GFF2608 at 14.118 kb on + strand at 14.118 kb on + strand at 14.118 kb on + strand at 14.118 kb on + strand at 14.607 kb on + strand, within GFF2609 at 14.607 kb on + strand, within GFF2609 at 14.607 kb on + strand, within GFF2609 at 14.643 kb on + strand, within GFF2609 at 14.644 kb on - strand, within GFF2609 at 14.644 kb on - strand, within GFF2609 at 14.856 kb on + strand at 14.857 kb on - strand at 14.991 kb on - strand at 14.991 kb on - strand at 14.991 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 12,268 + GFF2606 0.79 +0.9 12,268 + GFF2606 0.79 +0.3 12,269 - GFF2606 0.79 +0.6 12,269 - GFF2606 0.79 +0.2 12,346 + GFF2606 0.86 -0.7 12,346 + GFF2606 0.86 -0.0 12,346 + GFF2606 0.86 -0.6 12,376 + GFF2606 0.89 +0.0 12,376 + GFF2606 0.89 -2.3 12,377 - GFF2606 0.89 +0.5 12,377 - GFF2606 0.89 -0.5 12,412 + +0.2 12,412 + +0.2 12,412 + -0.1 12,413 - -1.1 12,527 + -0.4 12,803 + GFF2607 0.75 +0.0 12,803 + GFF2607 0.75 -0.4 12,803 + GFF2607 0.75 -0.7 12,803 + GFF2607 0.75 -1.7 12,803 + GFF2607 0.75 -0.1 12,803 + GFF2607 0.75 -0.4 12,803 + GFF2607 0.75 -1.0 12,804 - GFF2607 0.75 -0.3 12,804 - GFF2607 0.75 -0.1 12,804 - GFF2607 0.75 +0.0 12,804 - GFF2607 0.75 -0.1 12,804 - GFF2607 0.75 -2.4 12,804 - GFF2607 0.75 +0.6 13,233 - GFF2608 0.27 -0.2 13,428 + GFF2608 0.43 +0.8 13,428 + GFF2608 0.43 -0.3 13,437 - GFF2608 0.44 +0.1 13,442 + GFF2608 0.44 +0.4 13,442 + GFF2608 0.44 +0.8 13,442 + GFF2608 0.44 -0.1 13,442 + GFF2608 0.44 +0.1 13,442 + GFF2608 0.44 +1.2 13,442 + GFF2608 0.44 -0.2 13,442 + GFF2608 0.44 -0.6 13,442 + GFF2608 0.44 -0.1 13,442 + GFF2608 0.44 +0.2 13,442 + GFF2608 0.44 +0.3 13,443 - GFF2608 0.44 +0.3 13,443 - GFF2608 0.44 -0.3 13,443 - GFF2608 0.44 +0.6 13,443 - GFF2608 0.44 -0.3 13,443 - GFF2608 0.44 +0.3 13,443 - GFF2608 0.44 +1.0 13,443 - GFF2608 0.44 -0.5 13,748 + GFF2608 0.69 +1.9 13,749 - GFF2608 0.69 -0.0 14,118 + -0.6 14,118 + +1.1 14,118 + -0.4 14,118 + -0.2 14,607 + GFF2609 0.61 +1.2 14,607 + GFF2609 0.61 -2.4 14,607 + GFF2609 0.61 -0.5 14,643 + GFF2609 0.66 +0.7 14,644 - GFF2609 0.66 -0.0 14,644 - GFF2609 0.66 -0.3 14,856 + -0.4 14,857 - +2.2 14,991 - -0.3 14,991 - +0.1 14,991 - -0.0
Or see this region's nucleotide sequence