Strain Fitness in Variovorax sp. SCN45 around GFF2275

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2273 and GFF2274 are separated by 23 nucleotidesGFF2274 and GFF2275 are separated by 36 nucleotidesGFF2275 and GFF2276 are separated by 20 nucleotides GFF2273 - Transcriptional regulator, AcrR family, at 326,400 to 327,053 GFF2273 GFF2274 - Transcriptional regulator, MarR family, at 327,077 to 327,568 GFF2274 GFF2275 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 327,605 to 329,350 GFF2275 GFF2276 - Chlorogenate esterase, at 329,371 to 331,110 GFF2276 Position (kb) 327 328 329 330Strain fitness (log2 ratio) -2 -1 0 1 2at 326.733 kb on + strand, within GFF2273at 326.733 kb on + strand, within GFF2273at 326.734 kb on - strand, within GFF2273at 327.051 kb on + strandat 327.052 kb on - strandat 327.061 kb on + strandat 327.061 kb on + strandat 327.062 kb on - strandat 327.062 kb on - strandat 327.062 kb on - strandat 327.062 kb on - strandat 327.069 kb on + strandat 327.069 kb on + strandat 327.070 kb on - strandat 327.070 kb on - strandat 327.070 kb on - strandat 327.070 kb on - strandat 327.070 kb on - strandat 327.071 kb on + strandat 327.072 kb on - strandat 327.072 kb on - strandat 327.072 kb on - strandat 327.078 kb on + strandat 327.078 kb on + strandat 327.078 kb on + strandat 327.079 kb on - strandat 327.079 kb on - strandat 327.079 kb on - strandat 327.084 kb on + strandat 327.084 kb on + strandat 327.462 kb on + strand, within GFF2274at 327.579 kb on + strandat 327.606 kb on + strandat 327.702 kb on - strandat 327.813 kb on + strand, within GFF2275at 327.813 kb on + strand, within GFF2275at 327.831 kb on + strand, within GFF2275at 327.832 kb on - strand, within GFF2275at 327.832 kb on - strand, within GFF2275at 327.882 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.045 kb on - strand, within GFF2275at 328.045 kb on - strand, within GFF2275at 328.045 kb on - strand, within GFF2275at 328.045 kb on - strand, within GFF2275at 328.101 kb on + strand, within GFF2275at 328.101 kb on + strand, within GFF2275at 328.101 kb on + strand, within GFF2275at 328.101 kb on + strand, within GFF2275at 328.420 kb on - strand, within GFF2275at 328.905 kb on + strand, within GFF2275at 328.905 kb on + strand, within GFF2275at 328.905 kb on + strand, within GFF2275at 328.905 kb on + strand, within GFF2275at 328.906 kb on - strand, within GFF2275at 328.906 kb on - strand, within GFF2275at 328.950 kb on + strand, within GFF2275at 328.950 kb on + strand, within GFF2275at 328.950 kb on + strand, within GFF2275at 329.013 kb on + strand, within GFF2275at 329.106 kb on + strand, within GFF2275at 329.107 kb on - strand, within GFF2275at 329.107 kb on - strand, within GFF2275at 329.107 kb on - strand, within GFF2275at 329.344 kb on - strandat 329.372 kb on + strandat 329.373 kb on - strandat 329.429 kb on + strandat 329.429 kb on + strandat 329.429 kb on + strandat 329.430 kb on - strandat 329.430 kb on - strandat 329.651 kb on + strand, within GFF2276at 329.651 kb on + strand, within GFF2276at 329.651 kb on + strand, within GFF2276at 329.652 kb on - strand, within GFF2276at 329.652 kb on - strand, within GFF2276at 329.702 kb on + strand, within GFF2276at 329.703 kb on - strand, within GFF2276at 329.703 kb on - strand, within GFF2276at 329.703 kb on - strand, within GFF2276at 329.753 kb on + strand, within GFF2276at 329.753 kb on + strand, within GFF2276at 329.754 kb on - strand, within GFF2276at 329.991 kb on + strand, within GFF2276at 330.044 kb on + strand, within GFF2276at 330.044 kb on + strand, within GFF2276at 330.044 kb on + strand, within GFF2276at 330.045 kb on - strand, within GFF2276at 330.045 kb on - strand, within GFF2276at 330.045 kb on - strand, within GFF2276at 330.045 kb on - strand, within GFF2276at 330.342 kb on - strand, within GFF2276at 330.342 kb on - strand, within GFF2276

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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326,733 + GFF2273 0.51 -1.1
326,733 + GFF2273 0.51 -2.5
326,734 - GFF2273 0.51 -0.5
327,051 + -0.5
327,052 - +0.1
327,061 + -0.2
327,061 + -0.5
327,062 - -1.2
327,062 - -1.5
327,062 - -0.9
327,062 - +0.5
327,069 + +0.1
327,069 + +0.8
327,070 - -0.6
327,070 - +1.4
327,070 - -1.3
327,070 - +0.2
327,070 - -0.2
327,071 + +1.4
327,072 - -0.7
327,072 - +0.1
327,072 - -0.8
327,078 + +0.8
327,078 + -2.0
327,078 + +0.8
327,079 - -0.9
327,079 - +2.1
327,079 - +0.0
327,084 + -0.5
327,084 + -0.4
327,462 + GFF2274 0.78 +0.8
327,579 + +0.8
327,606 + +1.8
327,702 - +0.9
327,813 + GFF2275 0.12 -0.4
327,813 + GFF2275 0.12 -0.6
327,831 + GFF2275 0.13 -0.2
327,832 - GFF2275 0.13 +0.3
327,832 - GFF2275 0.13 -1.3
327,882 + GFF2275 0.16 +1.3
328,044 + GFF2275 0.25 +0.2
328,044 + GFF2275 0.25 +0.9
328,044 + GFF2275 0.25 -0.2
328,044 + GFF2275 0.25 +0.4
328,044 + GFF2275 0.25 +0.9
328,044 + GFF2275 0.25 +0.0
328,044 + GFF2275 0.25 -0.8
328,045 - GFF2275 0.25 -0.4
328,045 - GFF2275 0.25 -0.1
328,045 - GFF2275 0.25 +0.7
328,045 - GFF2275 0.25 +0.5
328,101 + GFF2275 0.28 +0.3
328,101 + GFF2275 0.28 -1.2
328,101 + GFF2275 0.28 +0.1
328,101 + GFF2275 0.28 -0.5
328,420 - GFF2275 0.47 -0.4
328,905 + GFF2275 0.74 +0.2
328,905 + GFF2275 0.74 -0.3
328,905 + GFF2275 0.74 +0.1
328,905 + GFF2275 0.74 -1.8
328,906 - GFF2275 0.75 -0.2
328,906 - GFF2275 0.75 -0.5
328,950 + GFF2275 0.77 +0.2
328,950 + GFF2275 0.77 -1.4
328,950 + GFF2275 0.77 +0.5
329,013 + GFF2275 0.81 +0.4
329,106 + GFF2275 0.86 -0.3
329,107 - GFF2275 0.86 -0.2
329,107 - GFF2275 0.86 -0.1
329,107 - GFF2275 0.86 -0.3
329,344 - -0.3
329,372 + +0.9
329,373 - -0.2
329,429 + +0.5
329,429 + -1.4
329,429 + -0.9
329,430 - +0.5
329,430 - +0.0
329,651 + GFF2276 0.16 +0.1
329,651 + GFF2276 0.16 -0.2
329,651 + GFF2276 0.16 +0.6
329,652 - GFF2276 0.16 +0.3
329,652 - GFF2276 0.16 +0.8
329,702 + GFF2276 0.19 +1.1
329,703 - GFF2276 0.19 +0.6
329,703 - GFF2276 0.19 +0.2
329,703 - GFF2276 0.19 +0.5
329,753 + GFF2276 0.22 +1.0
329,753 + GFF2276 0.22 +0.3
329,754 - GFF2276 0.22 +1.5
329,991 + GFF2276 0.36 +0.4
330,044 + GFF2276 0.39 +0.8
330,044 + GFF2276 0.39 -0.3
330,044 + GFF2276 0.39 +0.5
330,045 - GFF2276 0.39 +0.4
330,045 - GFF2276 0.39 +1.1
330,045 - GFF2276 0.39 -1.3
330,045 - GFF2276 0.39 -2.3
330,342 - GFF2276 0.56 +0.1
330,342 - GFF2276 0.56 -0.3

Or see this region's nucleotide sequence