Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1871 and GFF1872 are separated by 36 nucleotides GFF1872 and GFF1873 are separated by 4 nucleotides GFF1873 and GFF1875 are separated by 45 nucleotides GFF1875 and GFF1874 overlap by 2 nucleotides
GFF1871 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1), at 545,860 to 547,002
GFF1871
GFF1872 - no description, at 547,039 to 547,431
GFF1872
GFF1873 - KEGG: LacI family transcriptional regulator, at 547,436 to 548,446
GFF1873
GFF1875 - no description, at 548,492 to 548,626
GFF1875
GFF1874 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 548,625 to 549,581
GFF1874
Position (kb) 547
548
549 Strain fitness (log2 ratio) -2
-1
0
1 at 546.505 kb on + strand, within GFF1871 at 546.506 kb on - strand, within GFF1871 at 546.620 kb on + strand, within GFF1871 at 546.620 kb on + strand, within GFF1871 at 547.040 kb on + strand at 547.041 kb on - strand at 547.115 kb on + strand, within GFF1872 at 547.115 kb on + strand, within GFF1872 at 547.115 kb on + strand, within GFF1872 at 547.116 kb on - strand, within GFF1872 at 547.116 kb on - strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.311 kb on - strand, within GFF1872 at 547.311 kb on - strand, within GFF1872 at 547.311 kb on - strand, within GFF1872 at 547.311 kb on - strand, within GFF1872 at 547.630 kb on - strand, within GFF1873 at 547.630 kb on - strand, within GFF1873 at 547.788 kb on + strand, within GFF1873 at 547.788 kb on + strand, within GFF1873 at 547.789 kb on - strand, within GFF1873 at 547.851 kb on + strand, within GFF1873 at 547.950 kb on + strand, within GFF1873 at 548.175 kb on + strand, within GFF1873 at 548.175 kb on + strand, within GFF1873 at 548.588 kb on - strand, within GFF1875 at 548.588 kb on - strand, within GFF1875 at 549.249 kb on + strand, within GFF1874 at 549.250 kb on - strand, within GFF1874 at 549.390 kb on + strand, within GFF1874 at 549.390 kb on + strand, within GFF1874 at 549.402 kb on + strand, within GFF1874 at 549.402 kb on + strand, within GFF1874 at 549.403 kb on - strand, within GFF1874
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 546,505 + GFF1871 0.56 -1.1 546,506 - GFF1871 0.57 -0.4 546,620 + GFF1871 0.66 -1.1 546,620 + GFF1871 0.66 -1.9 547,040 + -0.8 547,041 - -0.6 547,115 + GFF1872 0.19 +0.5 547,115 + GFF1872 0.19 -0.6 547,115 + GFF1872 0.19 -0.2 547,116 - GFF1872 0.20 -1.0 547,116 - GFF1872 0.20 +0.3 547,283 + GFF1872 0.62 -0.9 547,283 + GFF1872 0.62 +0.1 547,283 + GFF1872 0.62 -0.3 547,283 + GFF1872 0.62 -0.7 547,283 + GFF1872 0.62 -0.2 547,283 + GFF1872 0.62 +0.6 547,311 - GFF1872 0.69 -0.6 547,311 - GFF1872 0.69 -0.1 547,311 - GFF1872 0.69 +0.4 547,311 - GFF1872 0.69 -0.8 547,630 - GFF1873 0.19 -1.2 547,630 - GFF1873 0.19 -1.0 547,788 + GFF1873 0.35 +0.2 547,788 + GFF1873 0.35 -0.9 547,789 - GFF1873 0.35 -0.2 547,851 + GFF1873 0.41 +0.2 547,950 + GFF1873 0.51 -0.6 548,175 + GFF1873 0.73 +0.5 548,175 + GFF1873 0.73 -1.9 548,588 - GFF1875 0.71 -0.9 548,588 - GFF1875 0.71 -0.1 549,249 + GFF1874 0.65 +0.0 549,250 - GFF1874 0.65 +0.5 549,390 + GFF1874 0.80 +0.5 549,390 + GFF1874 0.80 -0.1 549,402 + GFF1874 0.81 +0.0 549,402 + GFF1874 0.81 -0.9 549,403 - GFF1874 0.81 +0.0
Or see this region's nucleotide sequence