Strain Fitness in Variovorax sp. SCN45 around GFF166

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF165 and GFF166 are separated by 8 nucleotidesGFF166 and GFF167 are separated by 164 nucleotides GFF165 - Chromate transport protein ChrA, at 193,101 to 194,468 GFF165 GFF166 - Permease of the drug/metabolite transporter (DMT) superfamily, at 194,477 to 195,532 GFF166 GFF167 - Two-component system sensor histidine kinase, at 195,697 to 199,197 GFF167 Position (kb) 194 195 196Strain fitness (log2 ratio) -2 -1 0 1 2at 193.488 kb on + strand, within GFF165at 193.488 kb on + strand, within GFF165at 193.489 kb on - strand, within GFF165at 193.489 kb on - strand, within GFF165at 193.603 kb on + strand, within GFF165at 193.728 kb on + strand, within GFF165at 193.728 kb on + strand, within GFF165at 193.728 kb on + strand, within GFF165at 193.729 kb on - strand, within GFF165at 193.729 kb on - strand, within GFF165at 193.729 kb on - strand, within GFF165at 193.935 kb on + strand, within GFF165at 193.935 kb on + strand, within GFF165at 193.935 kb on + strand, within GFF165at 193.935 kb on + strand, within GFF165at 193.935 kb on + strand, within GFF165at 193.936 kb on - strand, within GFF165at 193.936 kb on - strand, within GFF165at 193.936 kb on - strand, within GFF165at 193.936 kb on - strand, within GFF165at 193.936 kb on - strand, within GFF165at 193.936 kb on - strand, within GFF165at 193.950 kb on + strand, within GFF165at 193.950 kb on + strand, within GFF165at 193.950 kb on + strand, within GFF165at 193.950 kb on + strand, within GFF165at 193.951 kb on - strand, within GFF165at 193.951 kb on - strand, within GFF165at 193.951 kb on - strand, within GFF165at 193.956 kb on + strand, within GFF165at 193.956 kb on + strand, within GFF165at 193.956 kb on + strand, within GFF165at 193.957 kb on - strand, within GFF165at 194.301 kb on + strand, within GFF165at 194.466 kb on + strandat 194.467 kb on - strandat 194.474 kb on + strandat 194.474 kb on + strandat 194.474 kb on + strandat 194.474 kb on + strandat 194.474 kb on + strandat 194.474 kb on + strandat 194.474 kb on + strandat 194.474 kb on + strandat 194.474 kb on + strandat 194.475 kb on - strandat 194.475 kb on - strandat 194.475 kb on - strandat 194.475 kb on - strandat 194.475 kb on - strandat 194.475 kb on - strandat 194.475 kb on - strandat 194.478 kb on + strandat 194.478 kb on + strandat 194.478 kb on + strandat 194.479 kb on - strandat 194.479 kb on - strandat 194.479 kb on - strandat 194.479 kb on - strandat 194.479 kb on - strandat 194.479 kb on - strandat 194.479 kb on - strandat 194.717 kb on + strand, within GFF166at 194.717 kb on + strand, within GFF166at 194.726 kb on - strand, within GFF166at 194.726 kb on - strand, within GFF166at 194.726 kb on - strand, within GFF166at 194.832 kb on + strand, within GFF166at 194.832 kb on + strand, within GFF166at 194.832 kb on + strand, within GFF166at 194.832 kb on + strand, within GFF166at 194.833 kb on - strand, within GFF166at 194.833 kb on - strand, within GFF166at 194.833 kb on - strand, within GFF166at 194.833 kb on - strand, within GFF166at 195.168 kb on + strand, within GFF166at 195.169 kb on - strand, within GFF166at 195.169 kb on - strand, within GFF166at 195.955 kb on + strandat 196.133 kb on + strand, within GFF167at 196.133 kb on + strand, within GFF167at 196.133 kb on + strand, within GFF167at 196.306 kb on + strand, within GFF167at 196.306 kb on + strand, within GFF167at 196.307 kb on - strand, within GFF167at 196.345 kb on + strand, within GFF167at 196.345 kb on + strand, within GFF167at 196.345 kb on + strand, within GFF167at 196.346 kb on - strand, within GFF167at 196.346 kb on - strand, within GFF167at 196.346 kb on - strand, within GFF167at 196.346 kb on - strand, within GFF167at 196.346 kb on - strand, within GFF167at 196.378 kb on - strand, within GFF167at 196.389 kb on - strand, within GFF167at 196.389 kb on - strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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193,488 + GFF165 0.28 -1.1
193,488 + GFF165 0.28 -0.4
193,489 - GFF165 0.28 +0.8
193,489 - GFF165 0.28 +0.1
193,603 + GFF165 0.37 +1.0
193,728 + GFF165 0.46 -0.2
193,728 + GFF165 0.46 -0.6
193,728 + GFF165 0.46 +0.1
193,729 - GFF165 0.46 +1.6
193,729 - GFF165 0.46 -1.0
193,729 - GFF165 0.46 -0.5
193,935 + GFF165 0.61 +0.3
193,935 + GFF165 0.61 -0.3
193,935 + GFF165 0.61 -0.1
193,935 + GFF165 0.61 -0.3
193,935 + GFF165 0.61 -0.4
193,936 - GFF165 0.61 +0.2
193,936 - GFF165 0.61 -0.6
193,936 - GFF165 0.61 -0.3
193,936 - GFF165 0.61 -1.6
193,936 - GFF165 0.61 -0.1
193,936 - GFF165 0.61 -0.8
193,950 + GFF165 0.62 -0.6
193,950 + GFF165 0.62 -0.4
193,950 + GFF165 0.62 +0.3
193,950 + GFF165 0.62 +1.0
193,951 - GFF165 0.62 -0.2
193,951 - GFF165 0.62 +0.5
193,951 - GFF165 0.62 -0.0
193,956 + GFF165 0.62 -0.2
193,956 + GFF165 0.62 +0.1
193,956 + GFF165 0.62 -0.5
193,957 - GFF165 0.63 -0.2
194,301 + GFF165 0.88 -1.2
194,466 + -1.0
194,467 - -0.4
194,474 + -0.6
194,474 + +0.4
194,474 + -0.8
194,474 + -0.8
194,474 + -0.4
194,474 + -0.6
194,474 + -0.4
194,474 + +0.6
194,474 + -0.3
194,475 - -0.1
194,475 - -2.1
194,475 - +0.0
194,475 - +1.6
194,475 - +0.6
194,475 - -1.0
194,475 - -1.2
194,478 + -0.8
194,478 + +0.9
194,478 + -0.0
194,479 - -1.0
194,479 - +0.4
194,479 - -1.4
194,479 - +0.2
194,479 - +0.5
194,479 - -0.8
194,479 - +0.0
194,717 + GFF166 0.23 +1.1
194,717 + GFF166 0.23 +0.7
194,726 - GFF166 0.24 +0.1
194,726 - GFF166 0.24 +0.4
194,726 - GFF166 0.24 -0.6
194,832 + GFF166 0.34 +0.4
194,832 + GFF166 0.34 -0.4
194,832 + GFF166 0.34 -0.1
194,832 + GFF166 0.34 +0.2
194,833 - GFF166 0.34 +0.1
194,833 - GFF166 0.34 -1.4
194,833 - GFF166 0.34 +0.2
194,833 - GFF166 0.34 -1.1
195,168 + GFF166 0.65 -0.6
195,169 - GFF166 0.66 -0.0
195,169 - GFF166 0.66 +0.2
195,955 + -0.1
196,133 + GFF167 0.12 -0.3
196,133 + GFF167 0.12 -0.0
196,133 + GFF167 0.12 -0.7
196,306 + GFF167 0.17 +0.3
196,306 + GFF167 0.17 -0.4
196,307 - GFF167 0.17 +0.1
196,345 + GFF167 0.19 -0.6
196,345 + GFF167 0.19 -0.0
196,345 + GFF167 0.19 +0.8
196,346 - GFF167 0.19 -0.0
196,346 - GFF167 0.19 +0.8
196,346 - GFF167 0.19 -2.0
196,346 - GFF167 0.19 -1.0
196,346 - GFF167 0.19 +0.8
196,378 - GFF167 0.19 -0.6
196,389 - GFF167 0.20 -0.2
196,389 - GFF167 0.20 +1.0
196,525 + GFF167 0.24 -0.2
196,525 + GFF167 0.24 -0.9
196,525 + GFF167 0.24 +0.0
196,525 + GFF167 0.24 -0.2
196,525 + GFF167 0.24 +1.1
196,525 + GFF167 0.24 +1.1
196,525 + GFF167 0.24 -1.5
196,525 + GFF167 0.24 -0.7
196,525 + GFF167 0.24 -0.8
196,525 + GFF167 0.24 -1.1
196,525 + GFF167 0.24 -1.2
196,525 + GFF167 0.24 -0.4
196,525 + GFF167 0.24 +0.6
196,525 + GFF167 0.24 -0.1
196,525 + GFF167 0.24 -1.2
196,525 + GFF167 0.24 -0.7
196,525 + GFF167 0.24 +0.4
196,525 + GFF167 0.24 +2.2
196,525 + GFF167 0.24 -0.3
196,525 + GFF167 0.24 -0.4
196,525 + GFF167 0.24 -0.9
196,526 - GFF167 0.24 +0.1
196,526 - GFF167 0.24 -0.4
196,526 - GFF167 0.24 -0.1
196,526 - GFF167 0.24 -1.5
196,526 - GFF167 0.24 +0.6
196,526 - GFF167 0.24 -0.3
196,526 - GFF167 0.24 +0.6
196,526 - GFF167 0.24 -1.4
196,526 - GFF167 0.24 +0.4
196,526 - GFF167 0.24 -1.6
196,526 - GFF167 0.24 -0.6
196,526 - GFF167 0.24 +2.5
196,526 - GFF167 0.24 -1.9
196,526 - GFF167 0.24 -0.5
196,526 - GFF167 0.24 -0.1
196,526 - GFF167 0.24 +0.8
196,526 - GFF167 0.24 +0.7
196,526 - GFF167 0.24 -0.1
196,526 - GFF167 0.24 +0.5
196,526 - GFF167 0.24 -0.5
196,526 - GFF167 0.24 +0.9
196,526 - GFF167 0.24 +0.7
196,526 - GFF167 0.24 -2.0
196,526 - GFF167 0.24 -0.9

Or see this region's nucleotide sequence