Strain Fitness in Variovorax sp. SCN45 around GFF149

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF148 and GFF150 are separated by 35 nucleotidesGFF150 and GFF149 overlap by 2 nucleotidesGFF149 and GFF151 are separated by 21 nucleotidesGFF151 and GFF152 are separated by 27 nucleotides GFF148 - Transcriptional regulator, LysR family, at 176,590 to 177,483 GFF148 GFF150 - no description, at 177,519 to 177,638 GFF150 GFF149 - Acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase 40 kDa form (EC 2.3.1.164), at 177,637 to 178,797 GFF149 GFF151 - FIG00460174: hypothetical protein, at 178,819 to 179,706 GFF151 GFF152 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 179,734 to 180,678 GFF152 Position (kb) 177 178 179Strain fitness (log2 ratio) -2 -1 0 1at 176.999 kb on + strand, within GFF148at 176.999 kb on + strand, within GFF148at 176.999 kb on + strand, within GFF148at 176.999 kb on + strand, within GFF148at 176.999 kb on + strand, within GFF148at 177.257 kb on + strand, within GFF148at 177.258 kb on - strand, within GFF148at 177.258 kb on - strand, within GFF148at 177.514 kb on + strandat 177.652 kb on + strandat 177.652 kb on + strandat 177.652 kb on + strandat 177.653 kb on - strandat 177.653 kb on - strandat 177.653 kb on - strandat 177.653 kb on - strandat 177.653 kb on - strandat 177.653 kb on - strandat 177.679 kb on - strandat 177.749 kb on - strandat 177.833 kb on - strand, within GFF149at 177.833 kb on - strand, within GFF149at 177.833 kb on - strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.938 kb on - strand, within GFF149at 178.071 kb on + strand, within GFF149at 178.071 kb on + strand, within GFF149at 178.072 kb on - strand, within GFF149at 178.072 kb on - strand, within GFF149at 178.072 kb on - strand, within GFF149at 178.342 kb on + strand, within GFF149at 178.537 kb on + strand, within GFF149at 178.537 kb on + strand, within GFF149at 178.537 kb on + strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.762 kb on + strandat 178.763 kb on - strandat 178.763 kb on - strandat 178.786 kb on + strandat 178.786 kb on + strandat 178.786 kb on + strandat 178.786 kb on + strandat 178.787 kb on - strandat 178.787 kb on - strandat 178.787 kb on - strandat 178.787 kb on - strandat 178.787 kb on - strandat 178.795 kb on + strandat 178.795 kb on + strandat 178.795 kb on + strandat 178.795 kb on + strandat 178.795 kb on + strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.877 kb on - strandat 178.877 kb on - strandat 178.877 kb on - strandat 178.877 kb on - strandat 178.877 kb on - strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.901 kb on - strandat 178.901 kb on - strandat 178.901 kb on - strandat 178.901 kb on - strandat 178.930 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 179.027 kb on - strand, within GFF151at 179.027 kb on - strand, within GFF151at 179.138 kb on + strand, within GFF151at 179.138 kb on + strand, within GFF151at 179.155 kb on + strand, within GFF151at 179.155 kb on + strand, within GFF151at 179.156 kb on - strand, within GFF151at 179.156 kb on - strand, within GFF151at 179.156 kb on - strand, within GFF151at 179.236 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.726 kb on + strandat 179.727 kb on - strandat 179.727 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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176,999 + GFF148 0.46 -1.2
176,999 + GFF148 0.46 -1.5
176,999 + GFF148 0.46 -1.3
176,999 + GFF148 0.46 +0.1
176,999 + GFF148 0.46 -0.3
177,257 + GFF148 0.75 -0.6
177,258 - GFF148 0.75 -0.2
177,258 - GFF148 0.75 -0.1
177,514 + +0.1
177,652 + -0.3
177,652 + -0.5
177,652 + -0.3
177,653 - -0.0
177,653 - -0.8
177,653 - +1.3
177,653 - -0.2
177,653 - +0.2
177,653 - +0.1
177,679 - +0.3
177,749 - -0.3
177,833 - GFF149 0.17 -0.6
177,833 - GFF149 0.17 -0.7
177,833 - GFF149 0.17 -0.5
177,844 + GFF149 0.18 +0.6
177,844 + GFF149 0.18 -1.2
177,844 + GFF149 0.18 -0.8
177,844 + GFF149 0.18 -0.5
177,844 + GFF149 0.18 +0.2
177,938 - GFF149 0.26 -0.4
178,071 + GFF149 0.37 -1.3
178,071 + GFF149 0.37 +0.7
178,072 - GFF149 0.37 -1.8
178,072 - GFF149 0.37 -1.0
178,072 - GFF149 0.37 -1.3
178,342 + GFF149 0.61 -1.1
178,537 + GFF149 0.78 -1.0
178,537 + GFF149 0.78 -0.1
178,537 + GFF149 0.78 -0.5
178,538 - GFF149 0.78 -0.0
178,538 - GFF149 0.78 +0.3
178,538 - GFF149 0.78 -0.1
178,538 - GFF149 0.78 -0.9
178,538 - GFF149 0.78 +0.4
178,538 - GFF149 0.78 +0.2
178,762 + -1.0
178,763 - -2.2
178,763 - -0.6
178,786 + -0.5
178,786 + +0.1
178,786 + -2.0
178,786 + -0.5
178,787 - +0.1
178,787 - -0.1
178,787 - -1.9
178,787 - +0.6
178,787 - +0.6
178,795 + +0.8
178,795 + -0.7
178,795 + -0.6
178,795 + -0.7
178,795 + +1.1
178,796 - -1.9
178,796 - +0.8
178,796 - +0.0
178,796 - -0.7
178,796 - +0.3
178,796 - -1.0
178,876 + +0.7
178,876 + +0.9
178,876 + -2.0
178,876 + -0.4
178,876 + +0.6
178,876 + +0.6
178,876 + -0.4
178,876 + -1.6
178,877 - +1.0
178,877 - +0.1
178,877 - -0.4
178,877 - -1.2
178,877 - +0.4
178,900 + -0.7
178,900 + +0.3
178,900 + -0.7
178,900 + -1.2
178,900 + -0.3
178,900 + +0.7
178,900 + -0.3
178,901 - -0.7
178,901 - +0.3
178,901 - -0.7
178,901 - -0.3
178,930 + GFF151 0.12 +0.4
178,939 + GFF151 0.14 +1.0
178,939 + GFF151 0.14 -1.0
178,939 + GFF151 0.14 -1.9
178,939 + GFF151 0.14 -1.0
178,939 + GFF151 0.14 +0.4
178,939 + GFF151 0.14 +0.6
178,940 - GFF151 0.14 +0.3
178,940 - GFF151 0.14 -1.2
178,940 - GFF151 0.14 -0.6
178,940 - GFF151 0.14 -0.4
178,940 - GFF151 0.14 +0.7
178,940 - GFF151 0.14 -0.2
178,977 + GFF151 0.18 -0.6
178,977 + GFF151 0.18 -0.2
178,977 + GFF151 0.18 -1.2
178,977 + GFF151 0.18 -0.5
178,977 + GFF151 0.18 -0.0
178,977 + GFF151 0.18 -0.2
178,978 - GFF151 0.18 +0.3
178,978 - GFF151 0.18 -0.4
178,978 - GFF151 0.18 -1.1
178,978 - GFF151 0.18 -0.1
178,978 - GFF151 0.18 -0.9
178,978 - GFF151 0.18 -0.4
178,978 - GFF151 0.18 -0.5
179,027 - GFF151 0.23 -0.8
179,027 - GFF151 0.23 -0.1
179,138 + GFF151 0.36 -0.4
179,138 + GFF151 0.36 +0.1
179,155 + GFF151 0.38 -1.7
179,155 + GFF151 0.38 -1.6
179,156 - GFF151 0.38 +0.6
179,156 - GFF151 0.38 -0.8
179,156 - GFF151 0.38 +0.8
179,236 + GFF151 0.47 +0.4
179,491 + GFF151 0.76 -0.7
179,491 + GFF151 0.76 -1.1
179,491 + GFF151 0.76 -1.0
179,491 + GFF151 0.76 -0.9
179,491 + GFF151 0.76 -1.4
179,491 + GFF151 0.76 -0.1
179,491 + GFF151 0.76 +0.6
179,491 + GFF151 0.76 +0.7
179,491 + GFF151 0.76 +1.2
179,494 + GFF151 0.76 -0.1
179,494 + GFF151 0.76 -0.7
179,494 + GFF151 0.76 -2.6
179,494 + GFF151 0.76 +0.3
179,494 + GFF151 0.76 +0.5
179,494 + GFF151 0.76 +0.4
179,495 - GFF151 0.76 +0.2
179,495 - GFF151 0.76 +1.2
179,495 - GFF151 0.76 -0.5
179,495 - GFF151 0.76 +0.4
179,495 - GFF151 0.76 -1.5
179,495 - GFF151 0.76 -0.4
179,495 - GFF151 0.76 -0.0
179,726 + +0.6
179,727 - -0.2
179,727 - -0.9

Or see this region's nucleotide sequence