Strain Fitness in Variovorax sp. SCN45 around GFF1418

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
6,606	+		GFF1416	0.23	-0.5
6,606	+		GFF1416	0.23	+0.2
6,607	-		GFF1416	0.23	-1.3
7,216	+				-0.2
7,216	+				-0.4
7,545	+		GFF1418	0.22	+0.4
7,545	+		GFF1418	0.22	-1.1
7,546	-		GFF1418	0.22	-0.4
7,734	+		GFF1418	0.42	+0.1
7,734	+		GFF1418	0.42	-1.1
7,734	+		GFF1418	0.42	+0.2
7,734	+		GFF1418	0.42	+0.0
7,734	+		GFF1418	0.42	-0.2
7,734	+		GFF1418	0.42	-0.2
7,734	+		GFF1418	0.42	+2.0
7,735	-		GFF1418	0.42	+0.0
7,735	-		GFF1418	0.42	-1.8
7,735	-		GFF1418	0.42	-0.3
7,735	-		GFF1418	0.42	+0.1
7,735	-		GFF1418	0.42	+0.2
7,735	-		GFF1418	0.42	-1.1
7,735	-		GFF1418	0.42	+2.0
7,735	-		GFF1418	0.42	+1.8
7,735	-		GFF1418	0.42	+0.7
7,735	-		GFF1418	0.42	+0.7
7,735	-		GFF1418	0.42	+0.1
7,735	-		GFF1418	0.42	-1.0
7,914	+		GFF1418	0.62	-0.6
8,035	-		GFF1418	0.75	-1.3
8,035	-		GFF1418	0.75	-1.6
8,064	-		GFF1418	0.78	-0.1
8,100	+		GFF1418	0.82	-0.9
8,100	+		GFF1418	0.82	-1.0
8,100	+		GFF1418	0.82	-0.1
8,101	-		GFF1418	0.82	+0.1
8,191	-				-0.3
8,191	-				+0.4
8,191	-				-1.1
8,191	-				-1.1
8,318	+				+0.2
8,356	+				-0.1
8,487	+				+0.0
8,487	+				+0.8
8,488	-				+1.7
8,488	-				-0.1
8,533	+				-1.0
8,533	+				-0.4
8,533	+				-0.6
8,534	-				-1.4
8,534	-				-0.8
8,574	+				-1.0
9,051	+		GFF1419	0.32	+1.7
9,051	+		GFF1419	0.32	-0.7
9,052	-		GFF1419	0.32	+1.0
9,180	+		GFF1419	0.38	+1.8
9,181	-		GFF1419	0.38	-0.6
9,252	+		GFF1419	0.41	-0.6
9,252	+		GFF1419	0.41	+0.3
9,253	-		GFF1419	0.41	+1.0