Strain Fitness in Variovorax sp. SCN45 around GFF1332

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1331 and GFF1332 are separated by 14 nucleotidesGFF1332 and GFF1333 are separated by 3 nucleotides GFF1331 - Transcriptional regulator, AraC family, at 670,293 to 671,372 GFF1331 GFF1332 - no description, at 671,387 to 671,518 GFF1332 GFF1333 - para-nitrobenzyl esterase (intracellular esterase B), at 671,522 to 673,354 GFF1333 Position (kb) 671 672Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 670.430 kb on + strand, within GFF1331at 670.430 kb on + strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.898 kb on - strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.290 kb on - strandat 671.290 kb on - strandat 671.410 kb on + strand, within GFF1332at 671.436 kb on - strand, within GFF1332at 671.466 kb on + strand, within GFF1332at 671.466 kb on + strand, within GFF1332at 671.466 kb on + strand, within GFF1332at 671.466 kb on + strand, within GFF1332at 671.466 kb on + strand, within GFF1332at 671.467 kb on - strand, within GFF1332at 671.527 kb on + strandat 671.527 kb on + strandat 671.527 kb on + strandat 671.527 kb on + strandat 671.527 kb on + strandat 671.528 kb on - strandat 671.528 kb on - strandat 671.528 kb on - strandat 671.528 kb on - strandat 671.528 kb on - strandat 671.528 kb on - strandat 671.954 kb on + strand, within GFF1333at 671.954 kb on + strand, within GFF1333at 671.954 kb on + strand, within GFF1333at 671.954 kb on + strand, within GFF1333at 671.954 kb on + strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 672.066 kb on + strand, within GFF1333at 672.085 kb on + strand, within GFF1333at 672.086 kb on - strand, within GFF1333at 672.086 kb on - strand, within GFF1333at 672.095 kb on + strand, within GFF1333at 672.113 kb on + strand, within GFF1333at 672.113 kb on + strand, within GFF1333at 672.113 kb on + strand, within GFF1333at 672.114 kb on - strand, within GFF1333at 672.114 kb on - strand, within GFF1333at 672.167 kb on + strand, within GFF1333at 672.168 kb on - strand, within GFF1333

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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670,430 + GFF1331 0.13 -0.7
670,430 + GFF1331 0.13 +0.7
670,431 - GFF1331 0.13 +0.5
670,431 - GFF1331 0.13 -0.5
670,431 - GFF1331 0.13 +2.0
670,431 - GFF1331 0.13 -0.7
670,431 - GFF1331 0.13 -0.2
670,450 + GFF1331 0.15 -0.3
670,450 + GFF1331 0.15 -0.1
670,450 + GFF1331 0.15 -0.2
670,450 + GFF1331 0.15 +0.4
670,450 + GFF1331 0.15 -0.3
670,450 + GFF1331 0.15 -0.6
670,451 - GFF1331 0.15 -0.9
670,451 - GFF1331 0.15 -0.5
670,451 - GFF1331 0.15 +0.0
670,451 - GFF1331 0.15 +0.6
670,451 - GFF1331 0.15 -1.3
670,451 - GFF1331 0.15 +1.8
670,451 - GFF1331 0.15 -0.1
670,699 + GFF1331 0.38 +0.3
670,699 + GFF1331 0.38 -0.5
670,699 + GFF1331 0.38 -0.3
670,699 + GFF1331 0.38 -0.6
670,699 + GFF1331 0.38 -0.4
670,699 + GFF1331 0.38 -0.1
670,699 + GFF1331 0.38 -0.3
670,700 - GFF1331 0.38 -0.2
670,700 - GFF1331 0.38 -0.3
670,700 - GFF1331 0.38 +0.1
670,700 - GFF1331 0.38 -0.5
670,700 - GFF1331 0.38 -1.5
670,700 - GFF1331 0.38 +0.9
670,898 - GFF1331 0.56 -0.7
671,014 + GFF1331 0.67 -1.4
671,014 + GFF1331 0.67 +0.1
671,014 + GFF1331 0.67 +0.9
671,014 + GFF1331 0.67 +1.2
671,015 - GFF1331 0.67 -0.8
671,015 - GFF1331 0.67 -2.3
671,015 - GFF1331 0.67 +0.8
671,015 - GFF1331 0.67 -0.5
671,289 + -1.1
671,289 + -0.3
671,289 + -0.3
671,289 + +0.3
671,289 + +0.7
671,289 + +0.7
671,289 + -0.6
671,289 + -0.1
671,289 + -0.3
671,290 - +0.9
671,290 - -2.8
671,410 + GFF1332 0.17 -0.2
671,436 - GFF1332 0.37 -1.0
671,466 + GFF1332 0.60 +0.9
671,466 + GFF1332 0.60 +1.4
671,466 + GFF1332 0.60 +1.7
671,466 + GFF1332 0.60 +0.2
671,466 + GFF1332 0.60 +0.5
671,467 - GFF1332 0.61 -0.0
671,527 + -0.5
671,527 + -1.2
671,527 + -0.2
671,527 + -1.3
671,527 + +0.1
671,528 - +3.8
671,528 - +0.1
671,528 - -1.5
671,528 - -1.2
671,528 - -2.0
671,528 - +1.1
671,954 + GFF1333 0.24 -0.7
671,954 + GFF1333 0.24 -0.0
671,954 + GFF1333 0.24 -1.3
671,954 + GFF1333 0.24 -2.3
671,954 + GFF1333 0.24 -0.2
671,955 - GFF1333 0.24 +1.9
671,955 - GFF1333 0.24 -1.8
671,955 - GFF1333 0.24 -2.4
671,955 - GFF1333 0.24 +0.8
671,955 - GFF1333 0.24 +0.2
671,955 - GFF1333 0.24 -0.3
671,955 - GFF1333 0.24 -1.2
671,955 - GFF1333 0.24 +0.1
671,955 - GFF1333 0.24 -2.0
672,066 + GFF1333 0.30 -0.6
672,085 + GFF1333 0.31 +0.1
672,086 - GFF1333 0.31 -0.3
672,086 - GFF1333 0.31 -0.3
672,095 + GFF1333 0.31 -0.3
672,113 + GFF1333 0.32 -0.9
672,113 + GFF1333 0.32 +0.3
672,113 + GFF1333 0.32 -0.5
672,114 - GFF1333 0.32 +1.8
672,114 - GFF1333 0.32 -0.9
672,167 + GFF1333 0.35 -1.2
672,168 - GFF1333 0.35 -0.8

Or see this region's nucleotide sequence