Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1116 and GFF1118 overlap by 4 nucleotides GFF1118 and GFF1117 overlap by 2 nucleotides GFF1117 and GFF1119 are separated by 2 nucleotides
GFF1116 - Membrane-bound lytic murein transglycosylase D, at 432,998 to 434,590
GFF1116
GFF1118 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 434,587 to 435,366
GFF1118
GFF1117 - FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-), at 435,365 to 436,135
GFF1117
GFF1119 - Ribonuclease HI (EC 3.1.26.4), at 436,138 to 436,620
GFF1119
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 433.587 kb on + strand, within GFF1116 at 433.588 kb on - strand, within GFF1116 at 433.588 kb on - strand, within GFF1116 at 433.776 kb on + strand, within GFF1116 at 433.776 kb on + strand, within GFF1116 at 433.776 kb on + strand, within GFF1116 at 433.776 kb on + strand, within GFF1116 at 433.777 kb on - strand, within GFF1116 at 433.777 kb on - strand, within GFF1116 at 433.777 kb on - strand, within GFF1116 at 433.777 kb on - strand, within GFF1116 at 433.777 kb on - strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.899 kb on + strand, within GFF1116 at 433.899 kb on + strand, within GFF1116 at 433.899 kb on + strand, within GFF1116 at 433.899 kb on + strand, within GFF1116 at 433.899 kb on + strand, within GFF1116 at 433.900 kb on - strand, within GFF1116 at 433.900 kb on - strand, within GFF1116 at 433.900 kb on - strand, within GFF1116 at 433.900 kb on - strand, within GFF1116 at 433.968 kb on + strand, within GFF1116 at 433.968 kb on + strand, within GFF1116 at 433.969 kb on - strand, within GFF1116 at 433.969 kb on - strand, within GFF1116 at 433.969 kb on - strand, within GFF1116 at 434.007 kb on + strand, within GFF1116 at 434.007 kb on + strand, within GFF1116 at 434.007 kb on + strand, within GFF1116 at 434.008 kb on - strand, within GFF1116 at 434.022 kb on + strand, within GFF1116 at 434.022 kb on + strand, within GFF1116 at 434.023 kb on - strand, within GFF1116 at 434.182 kb on - strand, within GFF1116 at 434.182 kb on - strand, within GFF1116 at 434.182 kb on - strand, within GFF1116 at 434.182 kb on - strand, within GFF1116 at 434.182 kb on - strand, within GFF1116 at 434.182 kb on - strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.248 kb on - strand, within GFF1116 at 434.248 kb on - strand, within GFF1116 at 434.248 kb on - strand, within GFF1116 at 434.248 kb on - strand, within GFF1116 at 434.248 kb on - strand, within GFF1116 at 434.248 kb on - strand, within GFF1116 at 434.281 kb on - strand, within GFF1116 at 434.281 kb on - strand, within GFF1116 at 434.281 kb on - strand, within GFF1116 at 434.281 kb on - strand, within GFF1116 at 434.281 kb on - strand, within GFF1116 at 434.298 kb on + strand, within GFF1116 at 434.298 kb on + strand, within GFF1116 at 434.298 kb on + strand, within GFF1116 at 434.298 kb on + strand, within GFF1116 at 434.298 kb on + strand, within GFF1116 at 434.299 kb on - strand, within GFF1116 at 434.299 kb on - strand, within GFF1116 at 434.299 kb on - strand, within GFF1116 at 434.347 kb on - strand, within GFF1116 at 434.455 kb on - strand at 434.792 kb on + strand, within GFF1118 at 434.792 kb on + strand, within GFF1118 at 434.792 kb on + strand, within GFF1118 at 434.793 kb on - strand, within GFF1118 at 434.793 kb on - strand, within GFF1118 at 434.793 kb on - strand, within GFF1118 at 434.844 kb on + strand, within GFF1118 at 434.845 kb on - strand, within GFF1118 at 434.845 kb on - strand, within GFF1118 at 434.855 kb on + strand, within GFF1118 at 434.855 kb on + strand, within GFF1118 at 434.855 kb on + strand, within GFF1118 at 434.856 kb on - strand, within GFF1118 at 434.856 kb on - strand, within GFF1118 at 435.023 kb on + strand, within GFF1118 at 435.023 kb on + strand, within GFF1118 at 435.023 kb on + strand, within GFF1118 at 435.023 kb on + strand, within GFF1118 at 435.024 kb on - strand, within GFF1118 at 435.024 kb on - strand, within GFF1118 at 435.024 kb on - strand, within GFF1118 at 435.043 kb on - strand, within GFF1118 at 435.053 kb on - strand, within GFF1118 at 435.053 kb on - strand, within GFF1118 at 435.053 kb on - strand, within GFF1118 at 435.116 kb on + strand, within GFF1118 at 435.116 kb on + strand, within GFF1118 at 435.117 kb on - strand, within GFF1118 at 435.220 kb on + strand, within GFF1118 at 435.220 kb on + strand, within GFF1118 at 435.220 kb on + strand, within GFF1118 at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.379 kb on + strand at 435.380 kb on - strand at 435.381 kb on + strand at 435.381 kb on + strand at 435.419 kb on + strand at 435.419 kb on + strand at 435.419 kb on + strand at 435.420 kb on - strand at 435.420 kb on - strand at 435.420 kb on - strand at 435.420 kb on - strand at 435.476 kb on + strand, within GFF1117 at 435.476 kb on + strand, within GFF1117 at 435.477 kb on - strand, within GFF1117 at 435.639 kb on + strand, within GFF1117 at 435.639 kb on + strand, within GFF1117 at 435.640 kb on - strand, within GFF1117 at 435.640 kb on - strand, within GFF1117 at 435.640 kb on - strand, within GFF1117 at 435.785 kb on + strand, within GFF1117 at 435.785 kb on + strand, within GFF1117 at 435.786 kb on - strand, within GFF1117 at 435.786 kb on - strand, within GFF1117 at 435.786 kb on - strand, within GFF1117 at 435.786 kb on - strand, within GFF1117 at 435.812 kb on + strand, within GFF1117 at 435.812 kb on + strand, within GFF1117 at 435.813 kb on - strand, within GFF1117 at 435.813 kb on - strand, within GFF1117 at 435.813 kb on - strand, within GFF1117 at 435.843 kb on - strand, within GFF1117 at 435.908 kb on + strand, within GFF1117 at 435.908 kb on + strand, within GFF1117 at 435.908 kb on + strand, within GFF1117 at 435.909 kb on - strand, within GFF1117 at 435.909 kb on - strand, within GFF1117 at 435.909 kb on - strand, within GFF1117 at 435.909 kb on - strand, within GFF1117 at 435.909 kb on - strand, within GFF1117 at 435.909 kb on - strand, within GFF1117 at 436.001 kb on + strand, within GFF1117 at 436.002 kb on - strand, within GFF1117 at 436.189 kb on + strand, within GFF1119 at 436.189 kb on + strand, within GFF1119 at 436.189 kb on + strand, within GFF1119 at 436.189 kb on + strand, within GFF1119 at 436.190 kb on - strand, within GFF1119 at 436.190 kb on - strand, within GFF1119 at 436.190 kb on - strand, within GFF1119 at 436.191 kb on + strand, within GFF1119
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 433,587 + GFF1116 0.37 -0.7 433,588 - GFF1116 0.37 -0.4 433,588 - GFF1116 0.37 +1.1 433,776 + GFF1116 0.49 -0.4 433,776 + GFF1116 0.49 -0.1 433,776 + GFF1116 0.49 +0.6 433,776 + GFF1116 0.49 +0.9 433,777 - GFF1116 0.49 +0.1 433,777 - GFF1116 0.49 -0.9 433,777 - GFF1116 0.49 -0.6 433,777 - GFF1116 0.49 -1.1 433,777 - GFF1116 0.49 -0.1 433,863 + GFF1116 0.54 -0.6 433,863 + GFF1116 0.54 -0.5 433,863 + GFF1116 0.54 -1.1 433,863 + GFF1116 0.54 +0.2 433,863 + GFF1116 0.54 -0.4 433,863 + GFF1116 0.54 -0.5 433,863 + GFF1116 0.54 +0.0 433,863 + GFF1116 0.54 +0.2 433,863 + GFF1116 0.54 -0.4 433,863 + GFF1116 0.54 -1.5 433,864 - GFF1116 0.54 -0.1 433,864 - GFF1116 0.54 +0.5 433,864 - GFF1116 0.54 +0.3 433,864 - GFF1116 0.54 +1.2 433,864 - GFF1116 0.54 -0.1 433,864 - GFF1116 0.54 +0.8 433,864 - GFF1116 0.54 -1.9 433,864 - GFF1116 0.54 -0.5 433,864 - GFF1116 0.54 +0.8 433,864 - GFF1116 0.54 +1.7 433,864 - GFF1116 0.54 -0.2 433,864 - GFF1116 0.54 +0.1 433,864 - GFF1116 0.54 +0.3 433,864 - GFF1116 0.54 -1.0 433,864 - GFF1116 0.54 -0.5 433,899 + GFF1116 0.57 +0.4 433,899 + GFF1116 0.57 -1.9 433,899 + GFF1116 0.57 +0.1 433,899 + GFF1116 0.57 -0.2 433,899 + GFF1116 0.57 -0.1 433,900 - GFF1116 0.57 -0.5 433,900 - GFF1116 0.57 +0.3 433,900 - GFF1116 0.57 -1.5 433,900 - GFF1116 0.57 -0.5 433,968 + GFF1116 0.61 -0.3 433,968 + GFF1116 0.61 -0.4 433,969 - GFF1116 0.61 -0.3 433,969 - GFF1116 0.61 -0.7 433,969 - GFF1116 0.61 +0.3 434,007 + GFF1116 0.63 -0.1 434,007 + GFF1116 0.63 -0.1 434,007 + GFF1116 0.63 -0.5 434,008 - GFF1116 0.63 -0.4 434,022 + GFF1116 0.64 -0.7 434,022 + GFF1116 0.64 -0.1 434,023 - GFF1116 0.64 -0.5 434,182 - GFF1116 0.74 -1.3 434,182 - GFF1116 0.74 +0.6 434,182 - GFF1116 0.74 +0.1 434,182 - GFF1116 0.74 -0.3 434,182 - GFF1116 0.74 -0.8 434,182 - GFF1116 0.74 -1.5 434,247 + GFF1116 0.78 +0.1 434,247 + GFF1116 0.78 +0.8 434,247 + GFF1116 0.78 -0.3 434,247 + GFF1116 0.78 -1.1 434,247 + GFF1116 0.78 -0.1 434,247 + GFF1116 0.78 -1.2 434,247 + GFF1116 0.78 -0.5 434,247 + GFF1116 0.78 +0.1 434,247 + GFF1116 0.78 -1.1 434,247 + GFF1116 0.78 +0.1 434,247 + GFF1116 0.78 -0.0 434,247 + GFF1116 0.78 -0.2 434,247 + GFF1116 0.78 -0.7 434,247 + GFF1116 0.78 -1.3 434,247 + GFF1116 0.78 +3.7 434,247 + GFF1116 0.78 -0.2 434,248 - GFF1116 0.78 -1.6 434,248 - GFF1116 0.78 +0.7 434,248 - GFF1116 0.78 -1.0 434,248 - GFF1116 0.78 -0.6 434,248 - GFF1116 0.78 +0.0 434,248 - GFF1116 0.78 -2.8 434,281 - GFF1116 0.81 -0.3 434,281 - GFF1116 0.81 -0.5 434,281 - GFF1116 0.81 -2.7 434,281 - GFF1116 0.81 -0.3 434,281 - GFF1116 0.81 -0.5 434,298 + GFF1116 0.82 -0.6 434,298 + GFF1116 0.82 -0.3 434,298 + GFF1116 0.82 -1.3 434,298 + GFF1116 0.82 +0.1 434,298 + GFF1116 0.82 -0.6 434,299 - GFF1116 0.82 +0.6 434,299 - GFF1116 0.82 -0.5 434,299 - GFF1116 0.82 -0.6 434,347 - GFF1116 0.85 +0.5 434,455 - -0.1 434,792 + GFF1118 0.26 +0.7 434,792 + GFF1118 0.26 -0.6 434,792 + GFF1118 0.26 -0.6 434,793 - GFF1118 0.26 -1.9 434,793 - GFF1118 0.26 +1.1 434,793 - GFF1118 0.26 -0.4 434,844 + GFF1118 0.33 -1.7 434,845 - GFF1118 0.33 -1.4 434,845 - GFF1118 0.33 -0.9 434,855 + GFF1118 0.34 -0.2 434,855 + GFF1118 0.34 +0.1 434,855 + GFF1118 0.34 -0.5 434,856 - GFF1118 0.34 +0.1 434,856 - GFF1118 0.34 +0.0 435,023 + GFF1118 0.56 -0.8 435,023 + GFF1118 0.56 +0.3 435,023 + GFF1118 0.56 -2.0 435,023 + GFF1118 0.56 -0.3 435,024 - GFF1118 0.56 -2.1 435,024 - GFF1118 0.56 -1.0 435,024 - GFF1118 0.56 -0.1 435,043 - GFF1118 0.58 -1.3 435,053 - GFF1118 0.60 -0.7 435,053 - GFF1118 0.60 +0.7 435,053 - GFF1118 0.60 -0.3 435,116 + GFF1118 0.68 -0.7 435,116 + GFF1118 0.68 -2.5 435,117 - GFF1118 0.68 +0.7 435,220 + GFF1118 0.81 +0.0 435,220 + GFF1118 0.81 -0.5 435,220 + GFF1118 0.81 -0.6 435,329 + -1.7 435,329 + +1.4 435,329 + -0.9 435,329 + +0.8 435,329 + -0.6 435,329 + +0.4 435,329 + -1.3 435,329 + -1.2 435,329 + -1.1 435,329 + -0.1 435,329 + -0.0 435,329 + -0.7 435,329 + +0.6 435,329 + +1.4 435,329 + -0.9 435,329 + -0.1 435,330 - -0.0 435,330 - -1.1 435,330 - +0.0 435,330 - +0.7 435,330 - +0.1 435,330 - +1.0 435,330 - -1.6 435,330 - -0.3 435,330 - -0.8 435,330 - -0.4 435,330 - -0.5 435,330 - -1.5 435,330 - -0.1 435,330 - +0.1 435,330 - -0.1 435,330 - +0.6 435,330 - -1.3 435,330 - -0.6 435,379 + +0.1 435,380 - -0.4 435,381 + -0.6 435,381 + +0.4 435,419 + -1.5 435,419 + -0.1 435,419 + -0.2 435,420 - +1.3 435,420 - -0.0 435,420 - -0.6 435,420 - +0.2 435,476 + GFF1117 0.14 +0.6 435,476 + GFF1117 0.14 -1.2 435,477 - GFF1117 0.15 -0.1 435,639 + GFF1117 0.36 -1.2 435,639 + GFF1117 0.36 +1.3 435,640 - GFF1117 0.36 -1.5 435,640 - GFF1117 0.36 +0.4 435,640 - GFF1117 0.36 -1.5 435,785 + GFF1117 0.54 -0.9 435,785 + GFF1117 0.54 -0.9 435,786 - GFF1117 0.55 +0.1 435,786 - GFF1117 0.55 +0.9 435,786 - GFF1117 0.55 -1.0 435,786 - GFF1117 0.55 -1.7 435,812 + GFF1117 0.58 +1.2 435,812 + GFF1117 0.58 +1.2 435,813 - GFF1117 0.58 -0.4 435,813 - GFF1117 0.58 -0.6 435,813 - GFF1117 0.58 +0.1 435,843 - GFF1117 0.62 -0.6 435,908 + GFF1117 0.70 -0.1 435,908 + GFF1117 0.70 +1.7 435,908 + GFF1117 0.70 +1.0 435,909 - GFF1117 0.71 +1.1 435,909 - GFF1117 0.71 -0.5 435,909 - GFF1117 0.71 +0.7 435,909 - GFF1117 0.71 +0.7 435,909 - GFF1117 0.71 +0.3 435,909 - GFF1117 0.71 +1.7 436,001 + GFF1117 0.82 -0.5 436,002 - GFF1117 0.83 -0.5 436,189 + GFF1119 0.11 -1.2 436,189 + GFF1119 0.11 -0.6 436,189 + GFF1119 0.11 -0.4 436,189 + GFF1119 0.11 -0.5 436,190 - GFF1119 0.11 +0.5 436,190 - GFF1119 0.11 -0.1 436,190 - GFF1119 0.11 -1.5 436,191 + GFF1119 0.11 -0.7
Or see this region's nucleotide sequence