Strain Fitness in Variovorax sp. SCN45 around GFF1018

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1017 and GFF1018 are separated by 33 nucleotidesGFF1018 and GFF1019 are separated by 7 nucleotides GFF1017 - conserved hypothetical protein-transmembrane prediction, at 334,966 to 335,946 GFF1017 GFF1018 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase (EC 2.1.1.185), at 335,980 to 336,726 GFF1018 GFF1019 - monooxygenase, FAD-binding, at 336,734 to 337,759 GFF1019 Position (kb) 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 335.161 kb on + strand, within GFF1017at 335.161 kb on + strand, within GFF1017at 335.162 kb on - strand, within GFF1017at 335.162 kb on - strand, within GFF1017at 335.162 kb on - strand, within GFF1017at 335.240 kb on - strand, within GFF1017at 335.333 kb on + strand, within GFF1017at 335.545 kb on + strand, within GFF1017at 335.545 kb on + strand, within GFF1017at 335.546 kb on - strand, within GFF1017at 335.546 kb on - strand, within GFF1017at 335.546 kb on - strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.891 kb on + strandat 335.892 kb on - strandat 335.965 kb on - strandat 335.965 kb on - strandat 335.965 kb on - strandat 335.970 kb on + strandat 335.971 kb on - strandat 336.042 kb on + strandat 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.534 kb on + strand, within GFF1018at 336.534 kb on + strand, within GFF1018at 336.534 kb on + strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.539 kb on - strand, within GFF1018at 336.539 kb on - strand, within GFF1018at 336.697 kb on + strandat 336.697 kb on + strandat 336.697 kb on + strandat 336.698 kb on - strandat 336.698 kb on - strandat 336.735 kb on + strandat 336.735 kb on + strandat 336.735 kb on + strandat 336.736 kb on - strandat 336.736 kb on - strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.778 kb on - strandat 336.778 kb on - strandat 336.778 kb on - strandat 336.778 kb on - strandat 336.894 kb on + strand, within GFF1019at 336.895 kb on - strand, within GFF1019at 336.895 kb on - strand, within GFF1019at 336.895 kb on - strand, within GFF1019at 337.254 kb on + strand, within GFF1019at 337.255 kb on - strand, within GFF1019at 337.255 kb on - strand, within GFF1019at 337.255 kb on - strand, within GFF1019at 337.255 kb on - strand, within GFF1019at 337.320 kb on + strand, within GFF1019at 337.320 kb on + strand, within GFF1019at 337.321 kb on - strand, within GFF1019at 337.379 kb on + strand, within GFF1019at 337.380 kb on - strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.620 kb on + strand, within GFF1019at 337.620 kb on + strand, within GFF1019at 337.621 kb on - strand, within GFF1019at 337.621 kb on - strand, within GFF1019at 337.621 kb on - strand, within GFF1019at 337.646 kb on + strand, within GFF1019at 337.646 kb on + strand, within GFF1019at 337.646 kb on + strand, within GFF1019at 337.646 kb on + strand, within GFF1019

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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335,161 + GFF1017 0.20 +0.2
335,161 + GFF1017 0.20 +0.8
335,162 - GFF1017 0.20 -0.4
335,162 - GFF1017 0.20 +0.2
335,162 - GFF1017 0.20 -0.8
335,240 - GFF1017 0.28 -0.9
335,333 + GFF1017 0.37 +0.0
335,545 + GFF1017 0.59 -1.1
335,545 + GFF1017 0.59 -0.4
335,546 - GFF1017 0.59 -1.3
335,546 - GFF1017 0.59 -1.4
335,546 - GFF1017 0.59 -0.4
335,650 + GFF1017 0.70 -0.9
335,650 + GFF1017 0.70 +0.5
335,650 + GFF1017 0.70 +0.7
335,650 + GFF1017 0.70 -0.2
335,650 + GFF1017 0.70 +0.8
335,651 - GFF1017 0.70 -1.3
335,651 - GFF1017 0.70 -0.2
335,651 - GFF1017 0.70 -0.4
335,651 - GFF1017 0.70 +1.4
335,651 - GFF1017 0.70 -0.1
335,651 - GFF1017 0.70 -0.8
335,651 - GFF1017 0.70 -0.2
335,891 + +0.8
335,892 - +0.5
335,965 - -0.7
335,965 - -0.6
335,965 - -0.8
335,970 + +1.8
335,971 - +0.4
336,042 + -0.2
336,442 + GFF1018 0.62 -0.7
336,442 + GFF1018 0.62 +0.4
336,442 + GFF1018 0.62 -0.7
336,442 + GFF1018 0.62 +0.6
336,442 + GFF1018 0.62 +1.2
336,442 + GFF1018 0.62 -0.2
336,443 - GFF1018 0.62 +0.2
336,443 - GFF1018 0.62 -0.4
336,443 - GFF1018 0.62 -0.2
336,443 - GFF1018 0.62 -0.2
336,443 - GFF1018 0.62 +0.0
336,534 + GFF1018 0.74 +0.1
336,534 + GFF1018 0.74 -1.4
336,534 + GFF1018 0.74 -1.6
336,535 - GFF1018 0.74 +1.8
336,535 - GFF1018 0.74 +0.4
336,535 - GFF1018 0.74 +0.2
336,535 - GFF1018 0.74 -0.2
336,535 - GFF1018 0.74 -0.6
336,535 - GFF1018 0.74 -2.2
336,535 - GFF1018 0.74 -1.2
336,535 - GFF1018 0.74 +1.8
336,538 + GFF1018 0.75 +0.0
336,538 + GFF1018 0.75 +0.7
336,538 + GFF1018 0.75 -0.1
336,538 + GFF1018 0.75 -0.2
336,538 + GFF1018 0.75 +0.9
336,538 + GFF1018 0.75 -0.2
336,538 + GFF1018 0.75 -0.1
336,538 + GFF1018 0.75 -0.3
336,538 + GFF1018 0.75 +0.6
336,539 - GFF1018 0.75 -0.4
336,539 - GFF1018 0.75 -0.6
336,697 + -0.5
336,697 + -0.4
336,697 + -0.6
336,698 - -0.3
336,698 - +0.2
336,735 + +0.6
336,735 + +0.4
336,735 + +1.1
336,736 - -1.5
336,736 - -0.6
336,777 + +1.0
336,777 + +0.0
336,777 + +1.3
336,777 + -0.8
336,777 + -0.6
336,777 + -0.6
336,777 + +0.2
336,778 - -0.8
336,778 - +0.0
336,778 - -1.2
336,778 - -0.5
336,894 + GFF1019 0.16 -0.8
336,895 - GFF1019 0.16 -0.6
336,895 - GFF1019 0.16 +0.4
336,895 - GFF1019 0.16 -0.2
337,254 + GFF1019 0.51 -0.3
337,255 - GFF1019 0.51 +0.3
337,255 - GFF1019 0.51 +2.8
337,255 - GFF1019 0.51 -0.5
337,255 - GFF1019 0.51 +1.6
337,320 + GFF1019 0.57 -0.8
337,320 + GFF1019 0.57 -0.5
337,321 - GFF1019 0.57 +0.4
337,379 + GFF1019 0.63 +0.1
337,380 - GFF1019 0.63 +0.8
337,413 + GFF1019 0.66 -0.1
337,413 + GFF1019 0.66 +0.4
337,413 + GFF1019 0.66 -0.8
337,413 + GFF1019 0.66 -0.8
337,413 + GFF1019 0.66 -0.8
337,414 - GFF1019 0.66 +0.4
337,414 - GFF1019 0.66 +0.1
337,414 - GFF1019 0.66 +0.8
337,414 - GFF1019 0.66 -0.8
337,414 - GFF1019 0.66 -0.6
337,414 - GFF1019 0.66 +0.1
337,414 - GFF1019 0.66 +0.8
337,414 - GFF1019 0.66 -0.4
337,620 + GFF1019 0.86 +0.0
337,620 + GFF1019 0.86 +0.2
337,621 - GFF1019 0.86 -3.3
337,621 - GFF1019 0.86 +0.4
337,621 - GFF1019 0.86 +0.3
337,646 + GFF1019 0.89 -1.7
337,646 + GFF1019 0.89 -1.0
337,646 + GFF1019 0.89 -0.1
337,646 + GFF1019 0.89 -1.6

Or see this region's nucleotide sequence