Experiment: (+)-Arabinogalactan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03005 and ABI39_RS03010 are separated by 358 nucleotides ABI39_RS03010 and ABI39_RS03015 are separated by 100 nucleotides ABI39_RS03015 and ABI39_RS03020 are separated by 167 nucleotides
ABI39_RS03005: ABI39_RS03005 - rhamnulose-1-phosphate aldolase, at 873,938 to 874,747
_RS03005
ABI39_RS03010: ABI39_RS03010 - DUF4251 domain-containing protein, at 875,106 to 875,603
_RS03010
ABI39_RS03015: ABI39_RS03015 - right-handed parallel beta-helix repeat-containing protein, at 875,704 to 877,218
_RS03015
ABI39_RS03020: ABI39_RS03020 - RagB/SusD family nutrient uptake outer membrane protein, at 877,386 to 879,005
_RS03020
Position (kb) 875
876
877
878 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 874.755 kb on - strand at 874.909 kb on + strand at 875.030 kb on - strand at 875.090 kb on - strand at 875.103 kb on + strand at 875.106 kb on - strand at 875.106 kb on - strand at 875.318 kb on - strand, within ABI39_RS03010 at 875.364 kb on + strand, within ABI39_RS03010 at 875.534 kb on - strand, within ABI39_RS03010 at 875.649 kb on + strand at 875.706 kb on - strand at 875.765 kb on - strand at 875.871 kb on + strand, within ABI39_RS03015 at 875.909 kb on + strand, within ABI39_RS03015 at 875.910 kb on - strand, within ABI39_RS03015 at 875.928 kb on + strand, within ABI39_RS03015 at 875.929 kb on - strand, within ABI39_RS03015 at 875.997 kb on + strand, within ABI39_RS03015 at 875.997 kb on + strand, within ABI39_RS03015 at 876.037 kb on - strand, within ABI39_RS03015 at 876.178 kb on + strand, within ABI39_RS03015 at 876.179 kb on - strand, within ABI39_RS03015 at 876.218 kb on - strand, within ABI39_RS03015 at 876.259 kb on + strand, within ABI39_RS03015 at 876.263 kb on - strand, within ABI39_RS03015 at 876.272 kb on + strand, within ABI39_RS03015 at 876.273 kb on - strand, within ABI39_RS03015 at 876.287 kb on + strand, within ABI39_RS03015 at 876.293 kb on + strand, within ABI39_RS03015 at 876.464 kb on - strand, within ABI39_RS03015 at 876.470 kb on + strand, within ABI39_RS03015 at 876.483 kb on + strand, within ABI39_RS03015 at 876.503 kb on - strand, within ABI39_RS03015 at 876.615 kb on + strand, within ABI39_RS03015 at 876.627 kb on + strand, within ABI39_RS03015 at 876.721 kb on + strand, within ABI39_RS03015 at 876.799 kb on + strand, within ABI39_RS03015 at 876.869 kb on - strand, within ABI39_RS03015 at 876.882 kb on + strand, within ABI39_RS03015 at 876.899 kb on + strand, within ABI39_RS03015 at 876.909 kb on + strand, within ABI39_RS03015 at 876.959 kb on - strand, within ABI39_RS03015 at 876.959 kb on - strand, within ABI39_RS03015 at 876.963 kb on - strand, within ABI39_RS03015 at 876.981 kb on + strand, within ABI39_RS03015 at 877.113 kb on + strand at 877.116 kb on + strand at 877.119 kb on + strand at 877.145 kb on + strand at 877.149 kb on - strand at 877.149 kb on - strand at 877.245 kb on + strand at 877.424 kb on + strand at 877.501 kb on + strand at 877.523 kb on + strand at 877.527 kb on - strand at 877.719 kb on + strand, within ABI39_RS03020 at 877.727 kb on + strand, within ABI39_RS03020 at 877.798 kb on + strand, within ABI39_RS03020 at 877.798 kb on + strand, within ABI39_RS03020 at 877.853 kb on + strand, within ABI39_RS03020 at 877.855 kb on + strand, within ABI39_RS03020 at 877.861 kb on + strand, within ABI39_RS03020 at 877.863 kb on + strand, within ABI39_RS03020 at 877.864 kb on - strand, within ABI39_RS03020 at 877.864 kb on - strand, within ABI39_RS03020 at 877.864 kb on - strand, within ABI39_RS03020 at 877.895 kb on - strand, within ABI39_RS03020 at 877.897 kb on - strand, within ABI39_RS03020 at 877.926 kb on - strand, within ABI39_RS03020 at 877.930 kb on - strand, within ABI39_RS03020 at 878.115 kb on + strand, within ABI39_RS03020
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan (C) remove 874,755 - -0.2 874,909 + +0.3 875,030 - -0.4 875,090 - -0.1 875,103 + +0.2 875,106 - -0.0 875,106 - +0.1 875,318 - ABI39_RS03010 0.43 -0.3 875,364 + ABI39_RS03010 0.52 -0.2 875,534 - ABI39_RS03010 0.86 -0.4 875,649 + -1.2 875,706 - +0.1 875,765 - +1.7 875,871 + ABI39_RS03015 0.11 +1.7 875,909 + ABI39_RS03015 0.14 +1.2 875,910 - ABI39_RS03015 0.14 +0.4 875,928 + ABI39_RS03015 0.15 +0.8 875,929 - ABI39_RS03015 0.15 +2.5 875,997 + ABI39_RS03015 0.19 +1.7 875,997 + ABI39_RS03015 0.19 +1.5 876,037 - ABI39_RS03015 0.22 +2.9 876,178 + ABI39_RS03015 0.31 +1.9 876,179 - ABI39_RS03015 0.31 +2.1 876,218 - ABI39_RS03015 0.34 +2.6 876,259 + ABI39_RS03015 0.37 +1.4 876,263 - ABI39_RS03015 0.37 +2.7 876,272 + ABI39_RS03015 0.37 +3.6 876,273 - ABI39_RS03015 0.38 +1.5 876,287 + ABI39_RS03015 0.38 +1.4 876,293 + ABI39_RS03015 0.39 +1.8 876,464 - ABI39_RS03015 0.50 +1.9 876,470 + ABI39_RS03015 0.51 +1.3 876,483 + ABI39_RS03015 0.51 +1.5 876,503 - ABI39_RS03015 0.53 +2.8 876,615 + ABI39_RS03015 0.60 +3.1 876,627 + ABI39_RS03015 0.61 +1.6 876,721 + ABI39_RS03015 0.67 +1.6 876,799 + ABI39_RS03015 0.72 +1.5 876,869 - ABI39_RS03015 0.77 +1.9 876,882 + ABI39_RS03015 0.78 +2.4 876,899 + ABI39_RS03015 0.79 +2.2 876,909 + ABI39_RS03015 0.80 +3.1 876,959 - ABI39_RS03015 0.83 +3.0 876,959 - ABI39_RS03015 0.83 +1.8 876,963 - ABI39_RS03015 0.83 +2.2 876,981 + ABI39_RS03015 0.84 +1.7 877,113 + +1.4 877,116 + +1.3 877,119 + +1.2 877,145 + +1.9 877,149 - +2.4 877,149 - +2.7 877,245 + +1.8 877,424 + -2.3 877,501 + +0.3 877,523 + +0.4 877,527 - -0.8 877,719 + ABI39_RS03020 0.21 +0.2 877,727 + ABI39_RS03020 0.21 +1.3 877,798 + ABI39_RS03020 0.25 -0.1 877,798 + ABI39_RS03020 0.25 -1.5 877,853 + ABI39_RS03020 0.29 +0.3 877,855 + ABI39_RS03020 0.29 -0.4 877,861 + ABI39_RS03020 0.29 +0.3 877,863 + ABI39_RS03020 0.29 +0.5 877,864 - ABI39_RS03020 0.30 -0.0 877,864 - ABI39_RS03020 0.30 +0.1 877,864 - ABI39_RS03020 0.30 +0.1 877,895 - ABI39_RS03020 0.31 +0.2 877,897 - ABI39_RS03020 0.32 +0.1 877,926 - ABI39_RS03020 0.33 +0.0 877,930 - ABI39_RS03020 0.34 +1.9 878,115 + ABI39_RS03020 0.45 -0.2
Or see this region's nucleotide sequence