Strain Fitness in Variovorax sp. SCN45 around GFF899

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF898 and GFF899 are separated by 14 nucleotidesGFF899 and GFF900 are separated by 113 nucleotides GFF898 - putative oxygenase subunit, at 208,566 to 210,299 GFF898 GFF899 - Dienelactone hydrolase family protein, at 210,314 to 211,546 GFF899 GFF900 - hypothetical protein, at 211,660 to 212,676 GFF900 Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2at 209.511 kb on + strand, within GFF898at 209.511 kb on + strand, within GFF898at 209.511 kb on + strand, within GFF898at 209.511 kb on + strand, within GFF898at 210.171 kb on + strandat 210.172 kb on - strandat 210.172 kb on - strandat 210.172 kb on - strandat 210.258 kb on + strandat 210.259 kb on - strandat 210.259 kb on - strandat 210.261 kb on + strandat 210.261 kb on + strandat 210.261 kb on + strandat 210.262 kb on - strandat 210.262 kb on - strandat 210.297 kb on + strandat 210.297 kb on + strandat 210.297 kb on + strandat 210.298 kb on - strandat 210.344 kb on + strandat 210.344 kb on + strandat 210.344 kb on + strandat 210.344 kb on + strandat 210.344 kb on + strandat 210.344 kb on + strandat 210.345 kb on - strandat 210.345 kb on - strandat 210.345 kb on - strandat 210.345 kb on - strandat 210.345 kb on - strandat 210.482 kb on + strand, within GFF899at 210.483 kb on - strand, within GFF899at 210.483 kb on - strand, within GFF899at 210.485 kb on + strand, within GFF899at 210.486 kb on - strand, within GFF899at 210.486 kb on - strand, within GFF899at 210.486 kb on - strand, within GFF899at 210.500 kb on + strand, within GFF899at 210.500 kb on + strand, within GFF899at 210.500 kb on + strand, within GFF899at 210.501 kb on - strand, within GFF899at 210.501 kb on - strand, within GFF899at 210.501 kb on - strand, within GFF899at 210.501 kb on - strand, within GFF899at 210.501 kb on - strand, within GFF899at 210.558 kb on - strand, within GFF899at 210.558 kb on - strand, within GFF899at 210.593 kb on + strand, within GFF899at 210.593 kb on + strand, within GFF899at 210.593 kb on + strand, within GFF899at 210.594 kb on - strand, within GFF899at 210.723 kb on - strand, within GFF899at 210.764 kb on + strand, within GFF899at 210.764 kb on + strand, within GFF899at 210.767 kb on + strand, within GFF899at 210.767 kb on + strand, within GFF899at 210.768 kb on - strand, within GFF899at 210.917 kb on + strand, within GFF899at 210.917 kb on + strand, within GFF899at 210.917 kb on + strand, within GFF899at 210.917 kb on + strand, within GFF899at 210.917 kb on + strand, within GFF899at 210.918 kb on - strand, within GFF899at 210.918 kb on - strand, within GFF899at 210.918 kb on - strand, within GFF899at 210.918 kb on - strand, within GFF899at 210.918 kb on - strand, within GFF899at 210.918 kb on - strand, within GFF899at 210.923 kb on + strand, within GFF899at 211.040 kb on + strand, within GFF899at 211.040 kb on + strand, within GFF899at 211.040 kb on + strand, within GFF899at 211.040 kb on + strand, within GFF899at 211.077 kb on - strand, within GFF899at 211.133 kb on + strand, within GFF899at 211.133 kb on + strand, within GFF899at 211.134 kb on - strand, within GFF899at 211.134 kb on - strand, within GFF899at 211.172 kb on + strand, within GFF899at 211.173 kb on - strand, within GFF899at 211.173 kb on - strand, within GFF899at 211.193 kb on + strand, within GFF899at 211.193 kb on + strand, within GFF899at 211.194 kb on - strand, within GFF899at 211.194 kb on - strand, within GFF899at 211.194 kb on - strand, within GFF899at 211.194 kb on - strand, within GFF899at 211.195 kb on + strand, within GFF899at 211.195 kb on + strand, within GFF899at 211.196 kb on - strand, within GFF899at 211.297 kb on + strand, within GFF899at 211.298 kb on - strand, within GFF899at 211.403 kb on + strand, within GFF899at 211.404 kb on - strand, within GFF899at 211.418 kb on + strand, within GFF899at 211.418 kb on + strand, within GFF899at 211.418 kb on + strand, within GFF899at 211.419 kb on - strand, within GFF899at 211.419 kb on - strand, within GFF899at 211.419 kb on - strand, within GFF899at 211.531 kb on + strandat 211.531 kb on + strandat 211.532 kb on - strandat 211.583 kb on + strandat 211.583 kb on + strandat 211.584 kb on - strandat 211.584 kb on - strandat 211.623 kb on - strandat 211.780 kb on + strand, within GFF900at 211.804 kb on + strand, within GFF900at 211.805 kb on - strand, within GFF900at 211.805 kb on - strand, within GFF900at 211.820 kb on - strand, within GFF900at 211.909 kb on + strand, within GFF900at 211.910 kb on - strand, within GFF900at 211.910 kb on - strand, within GFF900at 211.916 kb on - strand, within GFF900at 211.960 kb on + strand, within GFF900at 211.960 kb on + strand, within GFF900at 211.960 kb on + strand, within GFF900at 211.961 kb on - strand, within GFF900at 212.029 kb on + strand, within GFF900at 212.030 kb on - strand, within GFF900at 212.030 kb on - strand, within GFF900at 212.129 kb on - strand, within GFF900at 212.140 kb on + strand, within GFF900at 212.140 kb on + strand, within GFF900at 212.140 kb on + strand, within GFF900at 212.141 kb on - strand, within GFF900at 212.141 kb on - strand, within GFF900at 212.141 kb on - strand, within GFF900at 212.201 kb on - strand, within GFF900at 212.201 kb on - strand, within GFF900at 212.384 kb on - strand, within GFF900

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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209,511 + GFF898 0.54 +0.1
209,511 + GFF898 0.54 -0.3
209,511 + GFF898 0.54 -0.5
209,511 + GFF898 0.54 +0.1
210,171 + -1.8
210,172 - +1.3
210,172 - -0.1
210,172 - +0.0
210,258 + -0.6
210,259 - +0.2
210,259 - +0.3
210,261 + -0.4
210,261 + -0.7
210,261 + -0.5
210,262 - -1.2
210,262 - +1.6
210,297 + -0.8
210,297 + -0.3
210,297 + +0.3
210,298 - +0.9
210,344 + +0.1
210,344 + -0.8
210,344 + +0.0
210,344 + -1.4
210,344 + -0.8
210,344 + -0.3
210,345 - +0.4
210,345 - -1.7
210,345 - -1.6
210,345 - -0.6
210,345 - -0.1
210,482 + GFF899 0.14 -1.0
210,483 - GFF899 0.14 -0.3
210,483 - GFF899 0.14 -0.1
210,485 + GFF899 0.14 +0.6
210,486 - GFF899 0.14 -0.4
210,486 - GFF899 0.14 -0.2
210,486 - GFF899 0.14 -0.1
210,500 + GFF899 0.15 +0.2
210,500 + GFF899 0.15 -0.1
210,500 + GFF899 0.15 +0.3
210,501 - GFF899 0.15 -1.4
210,501 - GFF899 0.15 +0.2
210,501 - GFF899 0.15 -1.3
210,501 - GFF899 0.15 +0.1
210,501 - GFF899 0.15 -0.3
210,558 - GFF899 0.20 +0.5
210,558 - GFF899 0.20 +0.0
210,593 + GFF899 0.23 -2.0
210,593 + GFF899 0.23 +0.3
210,593 + GFF899 0.23 +2.1
210,594 - GFF899 0.23 -0.4
210,723 - GFF899 0.33 +1.2
210,764 + GFF899 0.36 +0.2
210,764 + GFF899 0.36 +0.6
210,767 + GFF899 0.37 +0.7
210,767 + GFF899 0.37 +0.3
210,768 - GFF899 0.37 +0.0
210,917 + GFF899 0.49 +0.1
210,917 + GFF899 0.49 -1.1
210,917 + GFF899 0.49 +0.7
210,917 + GFF899 0.49 -0.3
210,917 + GFF899 0.49 -0.0
210,918 - GFF899 0.49 -0.4
210,918 - GFF899 0.49 +0.6
210,918 - GFF899 0.49 +1.2
210,918 - GFF899 0.49 -1.0
210,918 - GFF899 0.49 +0.8
210,918 - GFF899 0.49 -0.5
210,923 + GFF899 0.49 +0.1
211,040 + GFF899 0.59 +0.9
211,040 + GFF899 0.59 -0.8
211,040 + GFF899 0.59 +0.1
211,040 + GFF899 0.59 +0.1
211,077 - GFF899 0.62 -0.4
211,133 + GFF899 0.66 -2.0
211,133 + GFF899 0.66 -1.4
211,134 - GFF899 0.67 -0.7
211,134 - GFF899 0.67 -1.0
211,172 + GFF899 0.70 +0.3
211,173 - GFF899 0.70 +0.0
211,173 - GFF899 0.70 -0.3
211,193 + GFF899 0.71 +0.1
211,193 + GFF899 0.71 -0.7
211,194 - GFF899 0.71 -0.2
211,194 - GFF899 0.71 -0.1
211,194 - GFF899 0.71 -0.8
211,194 - GFF899 0.71 -0.1
211,195 + GFF899 0.71 -0.8
211,195 + GFF899 0.71 -0.3
211,196 - GFF899 0.72 +0.8
211,297 + GFF899 0.80 +1.6
211,298 - GFF899 0.80 -0.9
211,403 + GFF899 0.88 -1.0
211,404 - GFF899 0.88 +0.1
211,418 + GFF899 0.90 +0.6
211,418 + GFF899 0.90 +0.1
211,418 + GFF899 0.90 +0.6
211,419 - GFF899 0.90 -0.2
211,419 - GFF899 0.90 +0.2
211,419 - GFF899 0.90 +0.4
211,531 + +1.1
211,531 + -0.4
211,532 - -2.4
211,583 + +0.4
211,583 + +0.1
211,584 - -1.8
211,584 - -2.6
211,623 - -1.1
211,780 + GFF900 0.12 -0.9
211,804 + GFF900 0.14 -0.8
211,805 - GFF900 0.14 +0.4
211,805 - GFF900 0.14 -0.3
211,820 - GFF900 0.16 -0.2
211,909 + GFF900 0.24 +2.1
211,910 - GFF900 0.25 +0.1
211,910 - GFF900 0.25 -1.4
211,916 - GFF900 0.25 +0.3
211,960 + GFF900 0.29 +0.2
211,960 + GFF900 0.29 -0.1
211,960 + GFF900 0.29 +0.0
211,961 - GFF900 0.30 -0.0
212,029 + GFF900 0.36 +1.0
212,030 - GFF900 0.36 -0.9
212,030 - GFF900 0.36 -2.1
212,129 - GFF900 0.46 -0.8
212,140 + GFF900 0.47 +0.4
212,140 + GFF900 0.47 -1.1
212,140 + GFF900 0.47 -0.1
212,141 - GFF900 0.47 -0.3
212,141 - GFF900 0.47 -0.2
212,141 - GFF900 0.47 +1.0
212,201 - GFF900 0.53 +0.3
212,201 - GFF900 0.53 -0.2
212,384 - GFF900 0.71 -0.6

Or see this region's nucleotide sequence