Strain Fitness in Variovorax sp. SCN45 around GFF838

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
142,605	+				+0.3
142,605	+				-1.2
142,605	+				-0.1
142,606	-				+0.6
142,758	+		GFF837	0.18	-0.6
142,758	+		GFF837	0.18	+0.6
142,759	-		GFF837	0.18	-1.2
142,759	-		GFF837	0.18	-0.0
142,782	+		GFF837	0.21	-0.2
142,782	+		GFF837	0.21	+0.5
143,278	-		GFF837	0.79	-0.0
143,319	+		GFF837	0.84	+0.3
143,319	+		GFF837	0.84	-1.2
143,319	+		GFF837	0.84	-0.1
143,319	+		GFF837	0.84	-0.2
143,320	-		GFF837	0.84	-0.8
143,361	+		GFF837	0.89	-0.1
143,361	+		GFF837	0.89	-1.4
143,361	+		GFF837	0.89	-1.0
143,361	+		GFF837	0.89	+1.0
143,362	-		GFF837	0.89	+0.9
143,362	-		GFF837	0.89	+1.2
143,362	-		GFF837	0.89	-1.2
143,495	+				+0.2
143,496	-				-0.8
143,525	+				-0.4
143,804	+		GFF838	0.32	+0.3
143,849	+		GFF838	0.36	+0.3
143,849	+		GFF838	0.36	+1.8
143,849	+		GFF838	0.36	-0.4
143,850	-		GFF838	0.36	+0.7
143,864	+		GFF838	0.37	+0.9
143,865	-		GFF838	0.38	+0.1
144,269	+		GFF838	0.74	-0.7
144,531	-				-1.2
144,599	+				+0.2
144,763	+				-0.9
144,763	+				-1.2
144,763	+				-0.0
144,764	-				+2.1
144,783	+				-0.0
144,784	-				-0.6
145,036	+				+1.6
145,036	+				+0.6
145,036	+				+0.6
145,036	+				+0.4
145,036	+				+0.2
145,037	-				+1.6
145,037	-				+0.4
145,037	-				+0.3
145,037	-				-0.2
145,427	-		GFF839	0.29	-0.5
145,427	-		GFF839	0.29	+1.1