Strain Fitness in Variovorax sp. SCN45 around GFF809

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
113,084	+		GFF808	0.49	-0.9
113,084	+		GFF808	0.49	+0.4
113,084	+		GFF808	0.49	+0.2
113,084	+		GFF808	0.49	-0.2
113,084	+		GFF808	0.49	+0.8
113,084	+		GFF808	0.49	+0.8
113,084	+		GFF808	0.49	-0.5
113,084	+		GFF808	0.49	-1.0
113,084	+		GFF808	0.49	-1.4
113,085	-		GFF808	0.49	-1.0
113,085	-		GFF808	0.49	-1.3
113,085	-		GFF808	0.49	-3.5
113,085	-		GFF808	0.49	-0.4
113,085	-		GFF808	0.49	-1.0
113,085	-		GFF808	0.49	-0.8
113,261	+		GFF808	0.59	+0.3
113,315	+		GFF808	0.62	-2.2
113,316	-		GFF808	0.63	-1.0
113,411	+		GFF808	0.68	-0.2
113,411	+		GFF808	0.68	-1.4
113,411	+		GFF808	0.68	+0.6
113,411	+		GFF808	0.68	-0.0
113,412	-		GFF808	0.68	-0.6
113,412	-		GFF808	0.68	-0.4
113,412	-		GFF808	0.68	-0.6
113,412	-		GFF808	0.68	-0.3
113,412	-		GFF808	0.68	-1.8
113,412	-		GFF808	0.68	-0.9
113,412	-		GFF808	0.68	-0.8
113,412	-		GFF808	0.68	+0.3
113,412	-		GFF808	0.68	-1.3
113,412	-		GFF808	0.68	-0.4
113,412	-		GFF808	0.68	-0.1
113,412	-		GFF808	0.68	-0.6
113,426	+		GFF808	0.69	-0.2
113,426	+		GFF808	0.69	-0.0
113,426	+		GFF808	0.69	-0.3
113,426	+		GFF808	0.69	-0.7
113,426	+		GFF808	0.69	-0.8
113,426	+		GFF808	0.69	-0.8
113,426	+		GFF808	0.69	-1.0
113,426	+		GFF808	0.69	-0.8
113,427	-		GFF808	0.69	+1.0
113,427	-		GFF808	0.69	-1.4
113,427	-		GFF808	0.69	+0.6
113,427	-		GFF808	0.69	-1.2
113,504	+		GFF808	0.73	-2.6
113,504	+		GFF808	0.73	-1.0
113,504	+		GFF808	0.73	+1.6
113,504	+		GFF808	0.73	-0.1
113,504	+		GFF808	0.73	-1.0
113,504	+		GFF808	0.73	-1.8
113,504	+		GFF808	0.73	-0.5
113,504	+		GFF808	0.73	-1.3
113,505	-		GFF808	0.73	+1.1
113,505	-		GFF808	0.73	-1.4
113,505	-		GFF808	0.73	-1.6
113,505	-		GFF808	0.73	+0.7
113,505	-		GFF808	0.73	-0.3
113,505	-		GFF808	0.73	-1.9
113,513	+		GFF808	0.74	+0.4
113,514	-		GFF808	0.74	-0.0
113,514	-		GFF808	0.74	-0.4
113,514	-		GFF808	0.74	-1.7
113,514	-		GFF808	0.74	-0.4
113,528	+		GFF808	0.75	-0.6
113,528	+		GFF808	0.75	-1.1
113,528	+		GFF808	0.75	-0.0
113,529	-		GFF808	0.75	-0.6
113,529	-		GFF808	0.75	-0.0
113,529	-		GFF808	0.75	+0.6
113,612	+		GFF808	0.79	-1.5
113,612	+		GFF808	0.79	+0.6
113,612	+		GFF808	0.79	-0.9
113,612	+		GFF808	0.79	+2.0
113,612	+		GFF808	0.79	+0.6
113,612	+		GFF808	0.79	-1.0
113,612	+		GFF808	0.79	-0.5
113,613	-		GFF808	0.79	-0.2
113,613	-		GFF808	0.79	+2.0
113,613	-		GFF808	0.79	+0.6
113,613	-		GFF808	0.79	-0.7
113,613	-		GFF808	0.79	-0.0
113,613	-		GFF808	0.79	-1.8
113,613	-		GFF808	0.79	-0.5
113,618	+		GFF808	0.80	-0.8
113,618	+		GFF808	0.80	-2.0
113,618	+		GFF808	0.80	-0.7
113,618	+		GFF808	0.80	-1.4
113,618	+		GFF808	0.80	-0.0
113,619	-		GFF808	0.80	+0.2
113,619	-		GFF808	0.80	-0.9
113,619	-		GFF808	0.80	-1.8
113,619	-		GFF808	0.80	-1.2
113,619	-		GFF808	0.80	+0.4
113,619	-		GFF808	0.80	-0.6
113,619	-		GFF808	0.80	-0.8
113,619	-		GFF808	0.80	-0.8
113,619	-		GFF808	0.80	+0.6
113,660	+		GFF808	0.82	-0.9
113,660	+		GFF808	0.82	-1.7
113,661	-		GFF808	0.82	-1.4
113,661	-		GFF808	0.82	+1.1
113,661	-		GFF808	0.82	-0.0
113,907	-				+0.6
113,924	+				-1.7
113,924	+				-0.7
113,924	+				-1.2
113,924	+				+0.3
113,924	+				-1.2
113,924	+				-1.4
113,924	+				-0.3
113,924	+				-1.6
113,924	+				-0.8
113,924	+				-1.2
113,925	-				+0.2
113,925	-				+0.1
113,925	-				-2.3
113,925	-				-0.7
113,925	-				-0.0
113,925	-				-1.2
113,925	-				-2.1
113,925	-				+0.1
113,954	+				+0.8
113,955	-				-0.9
113,955	-				-0.4
114,483	+		GFF809	0.38	+0.0
114,483	+		GFF809	0.38	-0.2
114,483	+		GFF809	0.38	+0.4
114,483	+		GFF809	0.38	-0.5
114,483	+		GFF809	0.38	-0.6
114,484	-		GFF809	0.39	-1.5
114,484	-		GFF809	0.39	+0.3
114,484	-		GFF809	0.39	-0.3
114,484	-		GFF809	0.39	-0.2
114,484	-		GFF809	0.39	+0.1
114,484	-		GFF809	0.39	-0.3
114,492	+		GFF809	0.39	-1.6
114,492	+		GFF809	0.39	+0.8
114,493	-		GFF809	0.39	+0.0
114,493	-		GFF809	0.39	+1.1
114,493	-		GFF809	0.39	-0.5
114,493	-		GFF809	0.39	+0.7
114,493	-		GFF809	0.39	-0.6
114,864	+		GFF809	0.71	+0.2
114,864	+		GFF809	0.71	-0.4
114,864	+		GFF809	0.71	-0.7
114,865	-		GFF809	0.71	+0.3
114,865	-		GFF809	0.71	-0.4
114,865	-		GFF809	0.71	-0.5
114,865	-		GFF809	0.71	-0.8
114,865	-		GFF809	0.71	-1.4
115,268	+				-1.6
115,268	+				-1.1
115,269	-				-0.4
115,269	-				-0.9
115,269	-				-1.8
115,269	-				-1.8
115,269	-				+0.0
115,269	-				-0.1
115,404	+				-0.4
115,404	+				-0.3
115,405	-				+0.1
115,405	-				+0.2
115,405	-				+0.0
115,405	-				+0.1
115,483	+				+1.1
115,483	+				-0.4
115,483	+				-0.6
115,483	+				+1.3
115,483	+				+0.3
115,483	+				+0.3
115,484	-				+1.0
115,484	-				-0.7
115,700	+				+1.7
115,700	+				-0.2
115,700	+				-0.4
115,700	+				-0.3
115,701	-				-0.6
115,701	-				+0.7
115,701	-				+0.6
115,701	-				-1.5
115,701	-				-0.0
115,701	-				-0.3
115,701	-				+0.6
115,718	+				+0.1
115,718	+				+1.0
115,718	+				-0.2
115,718	+				-0.2
115,718	+				+0.9
115,718	+				+0.9
115,718	+				-1.1
115,719	-				-0.7
115,719	-				+0.0
115,719	-				+0.6
115,719	-				-1.2
115,719	-				-0.6
115,719	-				+0.0
115,980	+		GFF810	0.38	-0.3
115,980	+		GFF810	0.38	+0.2
115,980	+		GFF810	0.38	+1.1
115,980	+		GFF810	0.38	-0.7
115,981	-		GFF810	0.38	+0.6
115,981	-		GFF810	0.38	+0.7
115,981	-		GFF810	0.38	-0.7
115,981	-		GFF810	0.38	-0.2