Strain Fitness in Variovorax sp. SCN45 around GFF749

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
11,531	+		GFF747	0.84	-0.1
11,531	+		GFF747	0.84	-1.7
11,532	-		GFF747	0.85	-0.2
11,532	-		GFF747	0.85	-0.4
11,567	+		GFF747	0.87	-0.1
11,567	+		GFF747	0.87	-0.9
11,568	-		GFF747	0.87	-1.0
11,568	-		GFF747	0.87	-1.5
11,759	+				-0.7
11,760	-				+0.3
11,760	-				-0.7
11,798	+				-0.4
11,798	+				-0.8
11,798	+				-1.0
11,798	+				-1.0
11,798	+				+0.3
11,798	+				-0.2
11,798	+				-1.4
11,798	+				+0.1
11,799	-				+0.3
11,799	-				-0.3
11,799	-				-2.2
11,799	-				+0.5
11,799	-				+1.0
11,799	-				-0.6
11,799	-				-0.8
11,799	-				-0.7
12,515	-				+0.2
12,515	-				+1.0
12,515	-				-0.4
12,562	+		GFF749	0.11	-1.1
12,563	-		GFF749	0.11	+0.2
12,563	-		GFF749	0.11	-0.0
12,580	+		GFF749	0.13	-0.4
12,694	+		GFF749	0.24	-0.8
12,695	-		GFF749	0.24	+0.1
12,695	-		GFF749	0.24	+1.0
12,695	-		GFF749	0.24	-0.7
12,790	+		GFF749	0.33	+0.0
13,453	+				+0.8
13,454	-				+1.8
13,560	+				-1.9
13,560	+				-0.0
13,560	+				+0.2
13,560	+				+0.3
13,561	-				-2.8
14,208	+		GFF750	0.44	-1.0
14,209	-		GFF750	0.44	+0.4
14,209	-		GFF750	0.44	-2.3
14,394	+		GFF750	0.58	-0.8
14,395	-		GFF750	0.59	-0.8
14,395	-		GFF750	0.59	-1.2