Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7410 and GFF7411 overlap by 4 nucleotides GFF7411 and GFF7412 overlap by 4 nucleotides GFF7412 and GFF7413 overlap by 4 nucleotides
GFF7410 - no description, at 338 to 574
GFF7410
GFF7411 - no description, at 571 to 1,416
GFF7411
GFF7412 - no description, at 1,413 to 1,997
GFF7412
GFF7413 - no description, at 1,994 to 2,542
GFF7413
Position (kb) 0
1
2 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.057 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.104 kb on - strand at 0.120 kb on + strand at 0.138 kb on + strand at 0.138 kb on + strand at 0.138 kb on + strand at 0.138 kb on + strand at 0.139 kb on - strand at 0.139 kb on - strand at 0.139 kb on - strand at 0.154 kb on + strand at 0.162 kb on + strand at 0.162 kb on + strand at 0.163 kb on - strand at 0.163 kb on - strand at 0.188 kb on + strand at 0.188 kb on + strand at 0.189 kb on - strand at 0.189 kb on - strand at 0.303 kb on + strand at 0.304 kb on - strand at 0.304 kb on - strand at 0.326 kb on + strand at 0.326 kb on + strand at 0.326 kb on + strand at 0.326 kb on + strand at 0.326 kb on + strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.327 kb on - strand at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.368 kb on + strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.369 kb on - strand, within GFF7410 at 0.446 kb on + strand, within GFF7410 at 0.446 kb on + strand, within GFF7410 at 0.581 kb on + strand at 0.581 kb on + strand at 0.581 kb on + strand at 0.582 kb on - strand at 0.582 kb on - strand at 0.582 kb on - strand at 0.601 kb on + strand at 0.601 kb on + strand at 0.601 kb on + strand at 0.602 kb on - strand at 0.602 kb on - strand at 0.655 kb on + strand at 0.655 kb on + strand at 0.655 kb on + strand at 0.655 kb on + strand at 0.655 kb on + strand at 0.656 kb on - strand, within GFF7411 at 0.656 kb on - strand, within GFF7411 at 0.656 kb on - strand, within GFF7411 at 0.675 kb on + strand, within GFF7411 at 0.675 kb on + strand, within GFF7411 at 0.675 kb on + strand, within GFF7411 at 0.675 kb on + strand, within GFF7411 at 0.676 kb on - strand, within GFF7411 at 0.886 kb on + strand, within GFF7411 at 0.927 kb on + strand, within GFF7411 at 0.927 kb on + strand, within GFF7411 at 0.927 kb on + strand, within GFF7411 at 0.927 kb on + strand, within GFF7411 at 0.927 kb on + strand, within GFF7411 at 0.928 kb on - strand, within GFF7411 at 0.982 kb on + strand, within GFF7411 at 0.982 kb on + strand, within GFF7411 at 1.097 kb on + strand, within GFF7411 at 1.108 kb on + strand, within GFF7411 at 1.109 kb on - strand, within GFF7411 at 1.109 kb on - strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.174 kb on + strand, within GFF7411 at 1.175 kb on - strand, within GFF7411 at 1.175 kb on - strand, within GFF7411 at 1.175 kb on - strand, within GFF7411 at 1.175 kb on - strand, within GFF7411 at 1.175 kb on - strand, within GFF7411 at 1.184 kb on - strand, within GFF7411 at 1.184 kb on - strand, within GFF7411 at 1.473 kb on + strand, within GFF7412 at 1.474 kb on - strand, within GFF7412 at 1.474 kb on - strand, within GFF7412 at 1.474 kb on - strand, within GFF7412 at 1.474 kb on - strand, within GFF7412 at 1.474 kb on - strand, within GFF7412 at 1.482 kb on + strand, within GFF7412 at 1.482 kb on + strand, within GFF7412 at 1.599 kb on + strand, within GFF7412 at 1.599 kb on + strand, within GFF7412 at 1.599 kb on + strand, within GFF7412 at 1.599 kb on + strand, within GFF7412 at 1.600 kb on - strand, within GFF7412 at 1.600 kb on - strand, within GFF7412 at 1.600 kb on - strand, within GFF7412 at 1.600 kb on - strand, within GFF7412 at 1.671 kb on + strand, within GFF7412 at 1.671 kb on + strand, within GFF7412 at 1.671 kb on + strand, within GFF7412 at 1.671 kb on + strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.672 kb on - strand, within GFF7412 at 1.707 kb on + strand, within GFF7412 at 1.707 kb on + strand, within GFF7412 at 1.707 kb on + strand, within GFF7412 at 1.707 kb on + strand, within GFF7412 at 1.707 kb on + strand, within GFF7412 at 1.708 kb on - strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.758 kb on + strand, within GFF7412 at 1.759 kb on - strand, within GFF7412 at 1.759 kb on - strand, within GFF7412 at 1.759 kb on - strand, within GFF7412 at 1.759 kb on - strand, within GFF7412 at 1.759 kb on - strand, within GFF7412 at 1.759 kb on - strand, within GFF7412 at 1.863 kb on + strand, within GFF7412 at 1.863 kb on + strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.864 kb on - strand, within GFF7412 at 1.902 kb on + strand, within GFF7412 at 1.902 kb on + strand, within GFF7412 at 1.903 kb on - strand, within GFF7412 at 1.965 kb on - strand at 1.965 kb on - strand at 2.127 kb on + strand, within GFF7413 at 2.128 kb on - strand, within GFF7413 at 2.128 kb on - strand, within GFF7413 at 2.128 kb on - strand, within GFF7413 at 2.255 kb on + strand, within GFF7413 at 2.255 kb on + strand, within GFF7413 at 2.256 kb on - strand, within GFF7413 at 2.256 kb on - strand, within GFF7413 at 2.256 kb on - strand, within GFF7413 at 2.256 kb on - strand, within GFF7413 at 2.256 kb on - strand, within GFF7413 at 2.330 kb on + strand, within GFF7413 at 2.330 kb on + strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413 at 2.331 kb on - strand, within GFF7413
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 57 + -0.8 73 + -0.7 73 + -0.2 73 + +0.2 73 + -0.3 73 + -1.0 73 + +0.5 73 + -1.0 73 + +0.5 73 + -0.8 104 - +0.5 120 + -0.0 138 + -0.2 138 + -0.5 138 + -0.4 138 + -0.9 139 - +0.9 139 - -0.2 139 - +0.4 154 + -0.3 162 + +1.2 162 + +0.2 163 - -0.6 163 - -1.8 188 + -0.5 188 + -0.8 189 - +1.3 189 - -1.1 303 + +0.2 304 - -0.5 304 - -0.2 326 + -0.2 326 + -0.3 326 + +1.0 326 + -0.1 326 + +0.1 327 - +0.2 327 - +0.0 327 - +0.1 327 - +0.3 327 - +0.1 327 - -0.6 327 - +0.2 327 - -0.3 327 - -0.7 327 - -0.0 368 + GFF7410 0.13 -0.9 368 + GFF7410 0.13 -0.8 368 + GFF7410 0.13 -0.7 368 + GFF7410 0.13 +0.3 368 + GFF7410 0.13 -0.5 368 + GFF7410 0.13 -0.5 368 + GFF7410 0.13 -0.6 368 + GFF7410 0.13 -0.6 368 + GFF7410 0.13 +0.2 368 + GFF7410 0.13 -0.1 369 - GFF7410 0.13 +0.0 369 - GFF7410 0.13 -0.9 369 - GFF7410 0.13 -0.9 369 - GFF7410 0.13 -0.2 369 - GFF7410 0.13 -0.5 369 - GFF7410 0.13 -0.1 369 - GFF7410 0.13 -0.2 369 - GFF7410 0.13 -1.0 369 - GFF7410 0.13 -0.4 369 - GFF7410 0.13 +0.6 369 - GFF7410 0.13 +1.3 446 + GFF7410 0.46 -0.8 446 + GFF7410 0.46 +0.4 581 + +0.3 581 + +0.0 581 + +0.6 582 - +0.4 582 - +0.1 582 - +0.2 601 + +0.2 601 + -0.1 601 + +0.1 602 - -0.6 602 - -1.5 655 + +0.0 655 + -1.0 655 + +0.1 655 + -0.9 655 + +1.0 656 - GFF7411 0.10 -0.5 656 - GFF7411 0.10 +1.2 656 - GFF7411 0.10 +0.5 675 + GFF7411 0.12 -0.4 675 + GFF7411 0.12 +0.6 675 + GFF7411 0.12 -0.5 675 + GFF7411 0.12 +1.0 676 - GFF7411 0.12 +1.6 886 + GFF7411 0.37 +0.7 927 + GFF7411 0.42 -0.1 927 + GFF7411 0.42 -0.2 927 + GFF7411 0.42 +0.4 927 + GFF7411 0.42 -0.2 927 + GFF7411 0.42 -1.2 928 - GFF7411 0.42 +0.3 982 + GFF7411 0.49 +0.6 982 + GFF7411 0.49 +0.0 1,097 + GFF7411 0.62 +0.4 1,108 + GFF7411 0.63 -0.4 1,109 - GFF7411 0.64 +0.7 1,109 - GFF7411 0.64 +0.2 1,174 + GFF7411 0.71 +1.5 1,174 + GFF7411 0.71 -0.9 1,174 + GFF7411 0.71 +0.3 1,174 + GFF7411 0.71 -0.2 1,174 + GFF7411 0.71 -1.4 1,174 + GFF7411 0.71 -0.2 1,174 + GFF7411 0.71 -0.0 1,174 + GFF7411 0.71 +0.0 1,174 + GFF7411 0.71 +1.1 1,174 + GFF7411 0.71 +0.5 1,175 - GFF7411 0.71 +0.6 1,175 - GFF7411 0.71 -0.0 1,175 - GFF7411 0.71 -0.9 1,175 - GFF7411 0.71 +1.6 1,175 - GFF7411 0.71 +0.3 1,184 - GFF7411 0.72 +0.3 1,184 - GFF7411 0.72 +0.0 1,473 + GFF7412 0.10 +0.3 1,474 - GFF7412 0.10 -0.0 1,474 - GFF7412 0.10 -0.7 1,474 - GFF7412 0.10 -0.4 1,474 - GFF7412 0.10 +0.2 1,474 - GFF7412 0.10 -0.4 1,482 + GFF7412 0.12 -0.2 1,482 + GFF7412 0.12 +0.4 1,599 + GFF7412 0.32 +0.6 1,599 + GFF7412 0.32 -0.6 1,599 + GFF7412 0.32 -1.5 1,599 + GFF7412 0.32 +0.6 1,600 - GFF7412 0.32 +0.1 1,600 - GFF7412 0.32 +0.6 1,600 - GFF7412 0.32 -0.3 1,600 - GFF7412 0.32 -0.4 1,671 + GFF7412 0.44 -0.2 1,671 + GFF7412 0.44 -0.7 1,671 + GFF7412 0.44 +0.2 1,671 + GFF7412 0.44 -0.2 1,672 - GFF7412 0.44 -0.4 1,672 - GFF7412 0.44 +0.3 1,672 - GFF7412 0.44 -0.4 1,672 - GFF7412 0.44 -0.9 1,672 - GFF7412 0.44 +0.5 1,672 - GFF7412 0.44 +0.4 1,672 - GFF7412 0.44 -0.5 1,672 - GFF7412 0.44 -0.4 1,672 - GFF7412 0.44 +1.4 1,672 - GFF7412 0.44 +0.2 1,707 + GFF7412 0.50 -0.7 1,707 + GFF7412 0.50 +0.2 1,707 + GFF7412 0.50 -0.1 1,707 + GFF7412 0.50 -0.7 1,707 + GFF7412 0.50 +0.0 1,708 - GFF7412 0.50 +1.1 1,758 + GFF7412 0.59 -0.9 1,758 + GFF7412 0.59 -0.8 1,758 + GFF7412 0.59 -0.0 1,758 + GFF7412 0.59 -0.8 1,758 + GFF7412 0.59 -0.5 1,758 + GFF7412 0.59 +2.2 1,758 + GFF7412 0.59 +0.1 1,758 + GFF7412 0.59 -0.3 1,759 - GFF7412 0.59 -1.2 1,759 - GFF7412 0.59 -1.0 1,759 - GFF7412 0.59 +0.3 1,759 - GFF7412 0.59 -2.1 1,759 - GFF7412 0.59 -0.1 1,759 - GFF7412 0.59 -2.6 1,863 + GFF7412 0.77 -1.3 1,863 + GFF7412 0.77 +0.1 1,864 - GFF7412 0.77 -0.4 1,864 - GFF7412 0.77 -1.4 1,864 - GFF7412 0.77 -0.4 1,864 - GFF7412 0.77 +0.4 1,864 - GFF7412 0.77 -0.0 1,864 - GFF7412 0.77 -1.0 1,864 - GFF7412 0.77 -0.4 1,902 + GFF7412 0.84 -1.2 1,902 + GFF7412 0.84 +0.0 1,903 - GFF7412 0.84 -0.3 1,965 - -0.1 1,965 - +0.6 2,127 + GFF7413 0.24 -0.6 2,128 - GFF7413 0.24 +0.0 2,128 - GFF7413 0.24 +1.6 2,128 - GFF7413 0.24 -1.5 2,255 + GFF7413 0.48 +1.5 2,255 + GFF7413 0.48 -1.0 2,256 - GFF7413 0.48 -0.1 2,256 - GFF7413 0.48 +1.1 2,256 - GFF7413 0.48 +0.7 2,256 - GFF7413 0.48 +0.6 2,256 - GFF7413 0.48 +1.0 2,330 + GFF7413 0.61 -0.1 2,330 + GFF7413 0.61 +0.5 2,331 - GFF7413 0.61 +0.2 2,331 - GFF7413 0.61 +0.1 2,331 - GFF7413 0.61 -0.6 2,331 - GFF7413 0.61 +1.6 2,331 - GFF7413 0.61 -1.0 2,331 - GFF7413 0.61 -0.1 2,331 - GFF7413 0.61 -0.1 2,331 - GFF7413 0.61 -0.3 2,331 - GFF7413 0.61 -0.6
Or see this region's nucleotide sequence