Strain Fitness in Variovorax sp. SCN45 around GFF7389

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
5,476	+		GFF7387	0.82	+2.3
5,498	+				-0.8
5,498	+				+0.4
5,499	-				-0.3
5,712	+		GFF7388	0.27	-0.4
5,712	+		GFF7388	0.27	-2.0
5,822	+		GFF7388	0.42	-0.7
5,888	-		GFF7388	0.51	+0.1
5,960	+		GFF7388	0.60	+0.2
6,061	-		GFF7388	0.74	+0.2
6,562	+		GFF7389	0.14	-0.3
6,562	+		GFF7389	0.14	-0.8
6,563	-		GFF7389	0.14	-0.7
6,569	-		GFF7389	0.14	-0.4
6,587	-		GFF7389	0.15	+0.0
6,631	+		GFF7389	0.18	+0.8
6,632	-		GFF7389	0.19	+0.0
6,632	-		GFF7389	0.19	+0.3
6,633	+		GFF7389	0.19	-0.1
6,634	-		GFF7389	0.19	-0.7
6,634	-		GFF7389	0.19	-0.9
6,634	-		GFF7389	0.19	-0.5
6,655	+		GFF7389	0.20	+1.2
6,656	-		GFF7389	0.20	-0.2
6,656	-		GFF7389	0.20	-1.6
6,656	-		GFF7389	0.20	-0.3
6,789	+		GFF7389	0.29	-0.1
6,994	+		GFF7389	0.44	-0.5
6,995	-		GFF7389	0.44	-1.0
7,133	-		GFF7389	0.54	+0.8
7,489	+		GFF7389	0.78	-1.1
7,489	+		GFF7389	0.78	-0.5
7,525	+		GFF7389	0.81	-0.2
7,525	+		GFF7389	0.81	-1.1
7,525	+		GFF7389	0.81	+2.4
7,550	-		GFF7389	0.83	-0.7
7,550	-		GFF7389	0.83	-0.3
7,628	-		GFF7389	0.88	+1.1
7,690	+				-1.9
7,690	+				-1.5
7,726	+				-1.4
7,898	-				+0.1
7,898	-				-0.5
8,150	+		GFF7390	0.23	+0.2
8,150	+		GFF7390	0.23	-1.9
8,151	-		GFF7390	0.23	+0.8
8,151	-		GFF7390	0.23	-0.4
8,241	+		GFF7390	0.29	-1.5
8,242	-		GFF7390	0.29	+1.2
8,242	-		GFF7390	0.29	-0.8
8,503	+		GFF7390	0.47	+0.8
8,503	+		GFF7390	0.47	+0.2
8,504	-		GFF7390	0.47	+0.2
8,657	+		GFF7390	0.57	-0.7
8,763	+		GFF7390	0.64	-0.9