Strain Fitness in Variovorax sp. SCN45 around GFF7355

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7353 and GFF7354 overlap by 1 nucleotidesGFF7354 and GFF7355 are separated by 15 nucleotidesGFF7355 and GFF7356 are separated by 182 nucleotidesGFF7356 and GFF7357 overlap by 4 nucleotides GFF7353 - 1,2-phenylacetyl-CoA epoxidase, subunit C (EC 1.14.13.149), at 2,184 to 2,945 GFF7353 GFF7354 - 1,2-phenylacetyl-CoA epoxidase, subunit B (EC 1.14.13.149), at 2,945 to 3,238 GFF7354 GFF7355 - 1,2-phenylacetyl-CoA epoxidase, subunit A (EC 1.14.13.149), at 3,254 to 4,243 GFF7355 GFF7356 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 4,426 to 5,151 GFF7356 GFF7357 - Phenylacetate ABC transporter, ATP-binding protein 1, at 5,148 to 5,912 GFF7357 Position (kb) 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2.362 kb on - strand, within GFF7353at 2.395 kb on + strand, within GFF7353at 2.437 kb on + strand, within GFF7353at 2.437 kb on + strand, within GFF7353at 2.437 kb on + strand, within GFF7353at 2.437 kb on + strand, within GFF7353at 2.437 kb on + strand, within GFF7353at 2.438 kb on - strand, within GFF7353at 2.438 kb on - strand, within GFF7353at 2.611 kb on + strand, within GFF7353at 2.612 kb on - strand, within GFF7353at 2.632 kb on + strand, within GFF7353at 2.777 kb on - strand, within GFF7353at 2.777 kb on - strand, within GFF7353at 2.915 kb on - strandat 2.976 kb on + strand, within GFF7354at 2.976 kb on + strand, within GFF7354at 2.976 kb on + strand, within GFF7354at 2.994 kb on + strand, within GFF7354at 2.994 kb on + strand, within GFF7354at 3.111 kb on + strand, within GFF7354at 3.111 kb on + strand, within GFF7354at 3.226 kb on + strandat 3.226 kb on + strandat 3.227 kb on - strandat 3.393 kb on - strand, within GFF7355at 3.493 kb on - strand, within GFF7355at 3.765 kb on + strand, within GFF7355at 3.765 kb on + strand, within GFF7355at 3.774 kb on + strand, within GFF7355at 3.774 kb on + strand, within GFF7355at 3.868 kb on - strand, within GFF7355at 3.885 kb on + strand, within GFF7355at 3.885 kb on + strand, within GFF7355at 3.957 kb on + strand, within GFF7355at 3.957 kb on + strand, within GFF7355at 3.957 kb on + strand, within GFF7355at 3.957 kb on + strand, within GFF7355at 3.958 kb on - strand, within GFF7355at 3.961 kb on + strand, within GFF7355at 3.961 kb on + strand, within GFF7355at 3.961 kb on + strand, within GFF7355at 3.961 kb on + strand, within GFF7355at 3.961 kb on + strand, within GFF7355at 3.962 kb on - strand, within GFF7355at 3.963 kb on + strand, within GFF7355at 3.963 kb on + strand, within GFF7355at 3.963 kb on + strand, within GFF7355at 3.963 kb on + strand, within GFF7355at 3.963 kb on + strand, within GFF7355at 3.964 kb on - strand, within GFF7355at 3.964 kb on - strand, within GFF7355at 3.964 kb on - strand, within GFF7355at 4.056 kb on + strand, within GFF7355at 4.056 kb on + strand, within GFF7355at 4.056 kb on + strand, within GFF7355at 4.056 kb on + strand, within GFF7355at 4.057 kb on - strand, within GFF7355at 4.057 kb on - strand, within GFF7355at 4.239 kb on + strandat 4.239 kb on + strandat 4.239 kb on + strandat 4.240 kb on - strandat 4.240 kb on - strandat 4.439 kb on + strandat 4.440 kb on - strandat 4.517 kb on + strand, within GFF7356at 4.518 kb on - strand, within GFF7356at 4.518 kb on - strand, within GFF7356at 4.779 kb on - strand, within GFF7356at 5.074 kb on + strand, within GFF7356at 5.102 kb on + strandat 5.167 kb on + strandat 5.167 kb on + strandat 5.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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2,362 - GFF7353 0.23 -1.3
2,395 + GFF7353 0.28 +1.0
2,437 + GFF7353 0.33 -0.7
2,437 + GFF7353 0.33 +0.2
2,437 + GFF7353 0.33 -0.5
2,437 + GFF7353 0.33 +0.0
2,437 + GFF7353 0.33 -0.3
2,438 - GFF7353 0.33 +0.0
2,438 - GFF7353 0.33 +0.4
2,611 + GFF7353 0.56 -0.8
2,612 - GFF7353 0.56 -0.3
2,632 + GFF7353 0.59 +0.4
2,777 - GFF7353 0.78 +0.5
2,777 - GFF7353 0.78 +0.1
2,915 - +2.0
2,976 + GFF7354 0.11 +0.1
2,976 + GFF7354 0.11 -0.4
2,976 + GFF7354 0.11 +0.1
2,994 + GFF7354 0.17 +0.1
2,994 + GFF7354 0.17 -0.4
3,111 + GFF7354 0.56 +0.6
3,111 + GFF7354 0.56 -0.7
3,226 + -0.5
3,226 + +0.0
3,227 - -0.9
3,393 - GFF7355 0.14 -0.3
3,493 - GFF7355 0.24 -1.9
3,765 + GFF7355 0.52 -1.0
3,765 + GFF7355 0.52 -0.4
3,774 + GFF7355 0.53 +1.7
3,774 + GFF7355 0.53 -0.5
3,868 - GFF7355 0.62 +0.4
3,885 + GFF7355 0.64 +0.3
3,885 + GFF7355 0.64 +0.5
3,957 + GFF7355 0.71 +3.0
3,957 + GFF7355 0.71 +0.3
3,957 + GFF7355 0.71 -0.2
3,957 + GFF7355 0.71 +1.2
3,958 - GFF7355 0.71 +0.1
3,961 + GFF7355 0.71 -0.1
3,961 + GFF7355 0.71 -0.8
3,961 + GFF7355 0.71 +0.9
3,961 + GFF7355 0.71 -0.5
3,961 + GFF7355 0.71 -0.5
3,962 - GFF7355 0.72 +0.7
3,963 + GFF7355 0.72 -0.4
3,963 + GFF7355 0.72 +0.2
3,963 + GFF7355 0.72 +0.7
3,963 + GFF7355 0.72 +0.4
3,963 + GFF7355 0.72 +0.3
3,964 - GFF7355 0.72 -1.2
3,964 - GFF7355 0.72 -0.2
3,964 - GFF7355 0.72 +0.7
4,056 + GFF7355 0.81 +0.8
4,056 + GFF7355 0.81 +1.3
4,056 + GFF7355 0.81 -0.3
4,056 + GFF7355 0.81 +1.3
4,057 - GFF7355 0.81 -0.3
4,057 - GFF7355 0.81 +0.0
4,239 + -0.0
4,239 + +0.7
4,239 + +1.7
4,240 - -1.2
4,240 - +0.1
4,439 + -1.1
4,440 - -0.1
4,517 + GFF7356 0.13 -0.7
4,518 - GFF7356 0.13 -0.7
4,518 - GFF7356 0.13 -0.3
4,779 - GFF7356 0.49 +0.2
5,074 + GFF7356 0.89 +0.0
5,102 + -0.3
5,167 + -0.3
5,167 + +0.3
5,168 - -0.4

Or see this region's nucleotide sequence