Strain Fitness in Variovorax sp. SCN45 around GFF7351

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
69	+				+0.3
118	+				+0.5
119	-				-1.5
449	-				-1.6
555	-				+0.3
587	+				-0.4
588	-				-1.8
588	-				+1.0
655	-		GFF7351	0.14	+0.0
663	-		GFF7351	0.15	+0.0
932	-		GFF7351	0.39	-1.3
1,198	-		GFF7351	0.62	-0.6
1,223	+		GFF7351	0.64	-0.6
1,223	+		GFF7351	0.64	+0.0
1,223	+		GFF7351	0.64	-0.6
1,224	-		GFF7351	0.64	-0.2
1,397	+		GFF7351	0.79	-1.3
1,445	+		GFF7351	0.83	-0.3
1,617	+				-0.3
1,694	+				+0.2
1,694	+				+0.5
1,695	-				+0.0
1,695	-				-0.0
1,716	+				-0.3
1,716	+				+1.0
2,016	-		GFF7352	0.66	-0.4
2,203	+				-0.0
2,362	-		GFF7353	0.23	-1.3
2,395	+		GFF7353	0.28	+1.0
2,437	+		GFF7353	0.33	-0.7
2,437	+		GFF7353	0.33	+0.2
2,437	+		GFF7353	0.33	-0.5
2,437	+		GFF7353	0.33	+0.0
2,437	+		GFF7353	0.33	-0.3
2,438	-		GFF7353	0.33	+0.0
2,438	-		GFF7353	0.33	+0.4
2,611	+		GFF7353	0.56	-0.8
2,612	-		GFF7353	0.56	-0.3
2,632	+		GFF7353	0.59	+0.4