Strain Fitness in Variovorax sp. SCN45 around GFF7333

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
2,252	+				+0.1
2,252	+				-1.3
2,253	-				+0.8
2,253	-				+0.2
2,253	-				-1.0
2,253	-				-2.4
2,284	-				-0.0
2,343	-				-0.2
2,343	-				-0.4
2,403	-				-0.3
2,429	+				-1.4
2,429	+				+0.7
2,429	+				-0.7
2,481	+				+1.2
2,634	+		GFF7332	0.23	-0.5
2,663	+		GFF7332	0.27	-0.8
2,664	-		GFF7332	0.27	-0.3
2,866	-		GFF7332	0.56	-0.0
2,919	-		GFF7332	0.64	-0.2
3,092	+		GFF7332	0.89	-0.7
3,120	+				-0.6
3,208	+				+0.1
3,209	-				-0.2
3,209	-				-1.0
3,230	+				-0.6
3,362	-		GFF7333	0.27	-1.0
3,362	-		GFF7333	0.27	-0.4
3,362	-		GFF7333	0.27	-0.2
3,368	-		GFF7333	0.28	-0.5
3,566	+		GFF7333	0.69	-1.2
3,624	-		GFF7333	0.81	-0.6
3,853	+		GFF7334	0.10	-0.2
3,854	-		GFF7334	0.10	+0.8
3,977	+		GFF7334	0.23	-0.3
3,978	-		GFF7334	0.23	+0.3
4,100	+		GFF7334	0.36	-1.7
4,100	+		GFF7334	0.36	-0.2
4,100	+		GFF7334	0.36	-0.4
4,100	+		GFF7334	0.36	-0.5
4,100	+		GFF7334	0.36	-1.0
4,101	-		GFF7334	0.36	-2.1
4,101	-		GFF7334	0.36	+1.0
4,101	-		GFF7334	0.36	+1.1
4,101	-		GFF7334	0.36	-1.0
4,101	-		GFF7334	0.36	-0.2
4,101	-		GFF7334	0.36	-0.9
4,101	-		GFF7334	0.36	+0.1
4,106	+		GFF7334	0.36	-0.1
4,466	+		GFF7334	0.74	-0.1
4,518	-		GFF7334	0.79	+1.0
4,670	+				+1.8
4,670	+				-0.8
4,671	-				-1.3