Strain Fitness in Variovorax sp. SCN45 around GFF7304

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7303 and GFF7304 are separated by 88 nucleotides GFF7303 - Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27), at 22,627 to 23,940 GFF7303 GFF7304 - Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196), at 24,029 to 26,131 GFF7304 Position (kb) 24 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 23.096 kb on + strand, within GFF7303at 23.096 kb on + strand, within GFF7303at 23.096 kb on + strand, within GFF7303at 23.096 kb on + strand, within GFF7303at 23.097 kb on - strand, within GFF7303at 23.097 kb on - strand, within GFF7303at 23.097 kb on - strand, within GFF7303at 23.097 kb on - strand, within GFF7303at 23.252 kb on + strand, within GFF7303at 23.252 kb on + strand, within GFF7303at 23.258 kb on + strand, within GFF7303at 23.259 kb on - strand, within GFF7303at 23.259 kb on - strand, within GFF7303at 23.259 kb on - strand, within GFF7303at 23.259 kb on - strand, within GFF7303at 23.276 kb on + strand, within GFF7303at 23.276 kb on + strand, within GFF7303at 23.276 kb on + strand, within GFF7303at 23.276 kb on + strand, within GFF7303at 23.276 kb on + strand, within GFF7303at 23.276 kb on + strand, within GFF7303at 23.276 kb on + strand, within GFF7303at 23.276 kb on + strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.277 kb on - strand, within GFF7303at 23.477 kb on + strand, within GFF7303at 23.477 kb on + strand, within GFF7303at 23.478 kb on - strand, within GFF7303at 23.478 kb on - strand, within GFF7303at 23.478 kb on - strand, within GFF7303at 23.489 kb on + strand, within GFF7303at 23.489 kb on + strand, within GFF7303at 23.489 kb on + strand, within GFF7303at 23.489 kb on + strand, within GFF7303at 23.489 kb on + strand, within GFF7303at 23.489 kb on + strand, within GFF7303at 23.489 kb on + strand, within GFF7303at 23.489 kb on + strand, within GFF7303at 23.490 kb on - strand, within GFF7303at 23.490 kb on - strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.493 kb on + strand, within GFF7303at 23.494 kb on - strand, within GFF7303at 23.494 kb on - strand, within GFF7303at 23.494 kb on - strand, within GFF7303at 23.494 kb on - strand, within GFF7303at 23.494 kb on - strand, within GFF7303at 23.494 kb on - strand, within GFF7303at 23.494 kb on - strand, within GFF7303at 23.494 kb on - strand, within GFF7303at 23.494 kb on - strand, within GFF7303at 23.494 kb on - strand, within GFF7303at 23.494 kb on - strand, within GFF7303at 23.494 kb on - strand, within GFF7303at 23.519 kb on + strand, within GFF7303at 23.519 kb on + strand, within GFF7303at 23.519 kb on + strand, within GFF7303at 23.519 kb on + strand, within GFF7303at 23.519 kb on + strand, within GFF7303at 23.519 kb on + strand, within GFF7303at 23.519 kb on + strand, within GFF7303at 23.520 kb on - strand, within GFF7303at 23.520 kb on - strand, within GFF7303at 23.520 kb on - strand, within GFF7303at 23.520 kb on - strand, within GFF7303at 23.589 kb on - strand, within GFF7303at 23.705 kb on + strand, within GFF7303at 23.705 kb on + strand, within GFF7303at 23.705 kb on + strand, within GFF7303at 23.705 kb on + strand, within GFF7303at 23.705 kb on + strand, within GFF7303at 23.706 kb on - strand, within GFF7303at 23.706 kb on - strand, within GFF7303at 23.706 kb on - strand, within GFF7303at 23.706 kb on - strand, within GFF7303at 23.706 kb on - strand, within GFF7303at 23.706 kb on - strand, within GFF7303at 23.706 kb on - strand, within GFF7303at 23.706 kb on - strand, within GFF7303at 23.706 kb on - strand, within GFF7303at 23.706 kb on - strand, within GFF7303at 23.706 kb on - strand, within GFF7303at 23.706 kb on - strand, within GFF7303at 23.792 kb on + strand, within GFF7303at 23.793 kb on - strand, within GFF7303at 23.793 kb on - strand, within GFF7303at 24.004 kb on + strandat 24.004 kb on + strandat 24.004 kb on + strandat 24.004 kb on + strandat 24.004 kb on + strandat 24.004 kb on + strandat 24.005 kb on - strandat 24.030 kb on + strandat 24.030 kb on + strandat 24.030 kb on + strandat 24.030 kb on + strandat 24.030 kb on + strandat 24.031 kb on - strandat 24.031 kb on - strandat 24.031 kb on - strandat 24.031 kb on - strandat 24.031 kb on - strandat 24.031 kb on - strandat 24.031 kb on - strandat 24.031 kb on - strandat 24.031 kb on - strandat 24.031 kb on - strandat 24.504 kb on + strand, within GFF7304at 24.504 kb on + strand, within GFF7304at 24.505 kb on - strand, within GFF7304at 24.505 kb on - strand, within GFF7304at 24.505 kb on - strand, within GFF7304at 24.732 kb on + strand, within GFF7304at 24.732 kb on + strand, within GFF7304at 24.732 kb on + strand, within GFF7304at 24.732 kb on + strand, within GFF7304at 24.733 kb on - strand, within GFF7304at 24.733 kb on - strand, within GFF7304at 24.733 kb on - strand, within GFF7304at 24.733 kb on - strand, within GFF7304at 24.998 kb on - strand, within GFF7304at 25.254 kb on + strand, within GFF7304at 25.255 kb on - strand, within GFF7304at 25.255 kb on - strand, within GFF7304at 25.257 kb on + strand, within GFF7304at 25.257 kb on + strand, within GFF7304at 25.257 kb on + strand, within GFF7304at 25.257 kb on + strand, within GFF7304at 25.257 kb on + strand, within GFF7304at 25.257 kb on + strand, within GFF7304at 25.258 kb on - strand, within GFF7304at 25.258 kb on - strand, within GFF7304at 25.258 kb on - strand, within GFF7304at 25.258 kb on - strand, within GFF7304at 25.258 kb on - strand, within GFF7304at 25.258 kb on - strand, within GFF7304at 25.258 kb on - strand, within GFF7304at 25.258 kb on - strand, within GFF7304at 25.258 kb on - strand, within GFF7304at 25.326 kb on + strand, within GFF7304at 25.326 kb on + strand, within GFF7304at 25.326 kb on + strand, within GFF7304at 25.326 kb on + strand, within GFF7304at 25.327 kb on - strand, within GFF7304at 25.327 kb on - strand, within GFF7304at 25.327 kb on - strand, within GFF7304at 25.426 kb on - strand, within GFF7304at 25.426 kb on - strand, within GFF7304at 25.461 kb on + strand, within GFF7304at 25.461 kb on + strand, within GFF7304at 25.462 kb on - strand, within GFF7304at 25.462 kb on - strand, within GFF7304at 25.462 kb on - strand, within GFF7304at 25.470 kb on + strand, within GFF7304at 25.470 kb on + strand, within GFF7304at 25.470 kb on + strand, within GFF7304at 25.470 kb on + strand, within GFF7304at 25.470 kb on + strand, within GFF7304at 25.470 kb on + strand, within GFF7304at 25.470 kb on + strand, within GFF7304at 25.470 kb on + strand, within GFF7304at 25.470 kb on + strand, within GFF7304at 25.471 kb on - strand, within GFF7304at 25.471 kb on - strand, within GFF7304at 25.471 kb on - strand, within GFF7304at 25.471 kb on - strand, within GFF7304at 25.471 kb on - strand, within GFF7304at 25.471 kb on - strand, within GFF7304at 25.471 kb on - strand, within GFF7304at 25.471 kb on - strand, within GFF7304at 25.515 kb on + strand, within GFF7304at 25.516 kb on - strand, within GFF7304at 25.516 kb on - strand, within GFF7304at 25.596 kb on + strand, within GFF7304at 25.596 kb on + strand, within GFF7304at 25.596 kb on + strand, within GFF7304at 25.596 kb on + strand, within GFF7304at 25.596 kb on + strand, within GFF7304at 25.597 kb on - strand, within GFF7304at 25.597 kb on - strand, within GFF7304at 25.597 kb on - strand, within GFF7304at 25.597 kb on - strand, within GFF7304at 25.597 kb on - strand, within GFF7304at 25.685 kb on + strand, within GFF7304at 25.685 kb on + strand, within GFF7304at 25.686 kb on - strand, within GFF7304at 25.686 kb on - strand, within GFF7304at 25.821 kb on + strand, within GFF7304at 25.821 kb on + strand, within GFF7304at 25.821 kb on + strand, within GFF7304at 25.821 kb on + strand, within GFF7304at 25.821 kb on + strand, within GFF7304at 25.822 kb on - strand, within GFF7304at 25.822 kb on - strand, within GFF7304at 25.822 kb on - strand, within GFF7304at 25.822 kb on - strand, within GFF7304at 25.846 kb on - strand, within GFF7304at 26.039 kb on + strandat 26.039 kb on + strandat 26.040 kb on - strandat 26.192 kb on - strandat 26.192 kb on - strandat 26.192 kb on - strandat 26.192 kb on - strandat 26.192 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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23,096 + GFF7303 0.36 -0.7
23,096 + GFF7303 0.36 -0.4
23,096 + GFF7303 0.36 -0.1
23,096 + GFF7303 0.36 -0.5
23,097 - GFF7303 0.36 -0.4
23,097 - GFF7303 0.36 -1.5
23,097 - GFF7303 0.36 -0.7
23,097 - GFF7303 0.36 -0.4
23,252 + GFF7303 0.48 +1.2
23,252 + GFF7303 0.48 -0.8
23,258 + GFF7303 0.48 -0.1
23,259 - GFF7303 0.48 -0.5
23,259 - GFF7303 0.48 +1.2
23,259 - GFF7303 0.48 -0.4
23,259 - GFF7303 0.48 +0.0
23,276 + GFF7303 0.49 -0.0
23,276 + GFF7303 0.49 -1.4
23,276 + GFF7303 0.49 -0.2
23,276 + GFF7303 0.49 -0.2
23,276 + GFF7303 0.49 -0.5
23,276 + GFF7303 0.49 -2.0
23,276 + GFF7303 0.49 -0.1
23,276 + GFF7303 0.49 +2.5
23,277 - GFF7303 0.49 +3.3
23,277 - GFF7303 0.49 -1.4
23,277 - GFF7303 0.49 -0.2
23,277 - GFF7303 0.49 -0.5
23,277 - GFF7303 0.49 +0.1
23,277 - GFF7303 0.49 +0.1
23,277 - GFF7303 0.49 -0.7
23,277 - GFF7303 0.49 -0.1
23,277 - GFF7303 0.49 -0.7
23,277 - GFF7303 0.49 +1.3
23,277 - GFF7303 0.49 -0.3
23,277 - GFF7303 0.49 -0.3
23,277 - GFF7303 0.49 -0.4
23,277 - GFF7303 0.49 -0.6
23,477 + GFF7303 0.65 +0.5
23,477 + GFF7303 0.65 +0.7
23,478 - GFF7303 0.65 -0.5
23,478 - GFF7303 0.65 -1.6
23,478 - GFF7303 0.65 +0.4
23,489 + GFF7303 0.66 +0.3
23,489 + GFF7303 0.66 +0.7
23,489 + GFF7303 0.66 -1.2
23,489 + GFF7303 0.66 -0.5
23,489 + GFF7303 0.66 -0.8
23,489 + GFF7303 0.66 -0.8
23,489 + GFF7303 0.66 +1.0
23,489 + GFF7303 0.66 +0.5
23,490 - GFF7303 0.66 +0.4
23,490 - GFF7303 0.66 -0.6
23,493 + GFF7303 0.66 -0.3
23,493 + GFF7303 0.66 +0.1
23,493 + GFF7303 0.66 +0.3
23,493 + GFF7303 0.66 -0.3
23,493 + GFF7303 0.66 -0.7
23,493 + GFF7303 0.66 -0.4
23,493 + GFF7303 0.66 -0.5
23,493 + GFF7303 0.66 +0.3
23,493 + GFF7303 0.66 -0.5
23,493 + GFF7303 0.66 -0.0
23,493 + GFF7303 0.66 -0.6
23,493 + GFF7303 0.66 -1.6
23,493 + GFF7303 0.66 +0.5
23,493 + GFF7303 0.66 +0.8
23,493 + GFF7303 0.66 +0.4
23,493 + GFF7303 0.66 -0.5
23,494 - GFF7303 0.66 -0.3
23,494 - GFF7303 0.66 -0.5
23,494 - GFF7303 0.66 +2.4
23,494 - GFF7303 0.66 -0.5
23,494 - GFF7303 0.66 -0.4
23,494 - GFF7303 0.66 -1.8
23,494 - GFF7303 0.66 -1.2
23,494 - GFF7303 0.66 +0.1
23,494 - GFF7303 0.66 -0.7
23,494 - GFF7303 0.66 -0.3
23,494 - GFF7303 0.66 +0.6
23,494 - GFF7303 0.66 -0.6
23,519 + GFF7303 0.68 -0.6
23,519 + GFF7303 0.68 -0.5
23,519 + GFF7303 0.68 -0.9
23,519 + GFF7303 0.68 -0.2
23,519 + GFF7303 0.68 +0.2
23,519 + GFF7303 0.68 -0.9
23,519 + GFF7303 0.68 -0.4
23,520 - GFF7303 0.68 -0.5
23,520 - GFF7303 0.68 +1.2
23,520 - GFF7303 0.68 -0.7
23,520 - GFF7303 0.68 -2.9
23,589 - GFF7303 0.73 -1.0
23,705 + GFF7303 0.82 -1.9
23,705 + GFF7303 0.82 +0.9
23,705 + GFF7303 0.82 -0.4
23,705 + GFF7303 0.82 -0.8
23,705 + GFF7303 0.82 -2.1
23,706 - GFF7303 0.82 +0.7
23,706 - GFF7303 0.82 -1.2
23,706 - GFF7303 0.82 +0.6
23,706 - GFF7303 0.82 -1.0
23,706 - GFF7303 0.82 -1.1
23,706 - GFF7303 0.82 +0.5
23,706 - GFF7303 0.82 -0.9
23,706 - GFF7303 0.82 +0.2
23,706 - GFF7303 0.82 -0.5
23,706 - GFF7303 0.82 -0.6
23,706 - GFF7303 0.82 -0.4
23,706 - GFF7303 0.82 -0.5
23,792 + GFF7303 0.89 +0.3
23,793 - GFF7303 0.89 +0.2
23,793 - GFF7303 0.89 -0.2
24,004 + -1.4
24,004 + -0.9
24,004 + -1.2
24,004 + -0.1
24,004 + -0.8
24,004 + -0.8
24,005 - -1.1
24,030 + +0.0
24,030 + -0.2
24,030 + -0.4
24,030 + -0.3
24,030 + -0.1
24,031 - -0.0
24,031 - +0.3
24,031 - +0.2
24,031 - -0.5
24,031 - -0.1
24,031 - -1.3
24,031 - +1.2
24,031 - -0.3
24,031 - -0.5
24,031 - -0.6
24,504 + GFF7304 0.23 +0.0
24,504 + GFF7304 0.23 -1.7
24,505 - GFF7304 0.23 +0.0
24,505 - GFF7304 0.23 -1.2
24,505 - GFF7304 0.23 -0.6
24,732 + GFF7304 0.33 -0.4
24,732 + GFF7304 0.33 -1.9
24,732 + GFF7304 0.33 -0.6
24,732 + GFF7304 0.33 +0.3
24,733 - GFF7304 0.33 +0.9
24,733 - GFF7304 0.33 -0.0
24,733 - GFF7304 0.33 +0.6
24,733 - GFF7304 0.33 -0.7
24,998 - GFF7304 0.46 -1.0
25,254 + GFF7304 0.58 -0.1
25,255 - GFF7304 0.58 +0.2
25,255 - GFF7304 0.58 +0.2
25,257 + GFF7304 0.58 +2.0
25,257 + GFF7304 0.58 -0.0
25,257 + GFF7304 0.58 -0.5
25,257 + GFF7304 0.58 -0.8
25,257 + GFF7304 0.58 -0.2
25,257 + GFF7304 0.58 -0.0
25,258 - GFF7304 0.58 +0.2
25,258 - GFF7304 0.58 -2.0
25,258 - GFF7304 0.58 -0.0
25,258 - GFF7304 0.58 +0.4
25,258 - GFF7304 0.58 +0.3
25,258 - GFF7304 0.58 -0.8
25,258 - GFF7304 0.58 +0.8
25,258 - GFF7304 0.58 -0.4
25,258 - GFF7304 0.58 +0.7
25,326 + GFF7304 0.62 -0.0
25,326 + GFF7304 0.62 -0.0
25,326 + GFF7304 0.62 +0.2
25,326 + GFF7304 0.62 +0.3
25,327 - GFF7304 0.62 -0.9
25,327 - GFF7304 0.62 +1.7
25,327 - GFF7304 0.62 +2.0
25,426 - GFF7304 0.66 -0.0
25,426 - GFF7304 0.66 +0.5
25,461 + GFF7304 0.68 +0.5
25,461 + GFF7304 0.68 +0.3
25,462 - GFF7304 0.68 +0.1
25,462 - GFF7304 0.68 +0.4
25,462 - GFF7304 0.68 -0.3
25,470 + GFF7304 0.69 -0.4
25,470 + GFF7304 0.69 -0.8
25,470 + GFF7304 0.69 -2.3
25,470 + GFF7304 0.69 -0.2
25,470 + GFF7304 0.69 +0.8
25,470 + GFF7304 0.69 +0.2
25,470 + GFF7304 0.69 +0.1
25,470 + GFF7304 0.69 -0.4
25,470 + GFF7304 0.69 -0.3
25,471 - GFF7304 0.69 +0.3
25,471 - GFF7304 0.69 +0.1
25,471 - GFF7304 0.69 +0.5
25,471 - GFF7304 0.69 -0.2
25,471 - GFF7304 0.69 +0.3
25,471 - GFF7304 0.69 -0.4
25,471 - GFF7304 0.69 -0.1
25,471 - GFF7304 0.69 +0.0
25,515 + GFF7304 0.71 -0.4
25,516 - GFF7304 0.71 -0.5
25,516 - GFF7304 0.71 +0.4
25,596 + GFF7304 0.75 -0.3
25,596 + GFF7304 0.75 +0.2
25,596 + GFF7304 0.75 -0.0
25,596 + GFF7304 0.75 -0.2
25,596 + GFF7304 0.75 -0.5
25,597 - GFF7304 0.75 +0.6
25,597 - GFF7304 0.75 -0.0
25,597 - GFF7304 0.75 +0.0
25,597 - GFF7304 0.75 -0.9
25,597 - GFF7304 0.75 -0.6
25,685 + GFF7304 0.79 -1.0
25,685 + GFF7304 0.79 +1.0
25,686 - GFF7304 0.79 -0.7
25,686 - GFF7304 0.79 -0.1
25,821 + GFF7304 0.85 +0.0
25,821 + GFF7304 0.85 -0.3
25,821 + GFF7304 0.85 -0.2
25,821 + GFF7304 0.85 -0.6
25,821 + GFF7304 0.85 +0.1
25,822 - GFF7304 0.85 -0.9
25,822 - GFF7304 0.85 -1.3
25,822 - GFF7304 0.85 +0.4
25,822 - GFF7304 0.85 -0.2
25,846 - GFF7304 0.86 -0.3
26,039 + +0.6
26,039 + +0.2
26,040 - -0.1
26,192 - -0.4
26,192 - -0.1
26,192 - +0.1
26,192 - -1.3
26,192 - +0.3

Or see this region's nucleotide sequence