Strain Fitness in Variovorax sp. SCN45 around GFF7290

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF7288 and GFF7289 are separated by 161 nucleotidesGFF7289 and GFF7290 overlap by 8 nucleotidesGFF7290 and GFF7291 are separated by 65 nucleotides GFF7288 - Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2), at 6,099 to 7,730 GFF7288 GFF7289 - 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), at 7,892 to 8,629 GFF7289 GFF7290 - Putative transmembrane protein, at 8,622 to 9,380 GFF7290 GFF7291 - Magnesium and cobalt transport protein CorA, at 9,446 to 10,432 GFF7291 Position (kb) 8 9 10Strain fitness (log2 ratio) -1 0 1 2at 7.673 kb on - strandat 7.729 kb on - strandat 8.477 kb on + strand, within GFF7289at 8.477 kb on + strand, within GFF7289at 8.478 kb on - strand, within GFF7289at 8.577 kb on - strandat 8.658 kb on - strandat 8.731 kb on + strand, within GFF7290at 8.731 kb on + strand, within GFF7290at 8.731 kb on + strand, within GFF7290at 8.732 kb on - strand, within GFF7290at 8.858 kb on - strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.256 kb on + strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.257 kb on - strand, within GFF7290at 9.418 kb on + strandat 9.418 kb on + strandat 9.418 kb on + strandat 9.418 kb on + strandat 9.419 kb on - strandat 9.474 kb on + strandat 9.474 kb on + strandat 9.474 kb on + strandat 9.474 kb on + strandat 9.474 kb on + strandat 9.475 kb on - strandat 9.475 kb on - strandat 9.520 kb on - strandat 9.525 kb on + strandat 9.573 kb on + strand, within GFF7291at 9.573 kb on + strand, within GFF7291at 9.573 kb on + strand, within GFF7291at 9.573 kb on + strand, within GFF7291at 9.573 kb on + strand, within GFF7291at 9.573 kb on + strand, within GFF7291at 9.948 kb on + strand, within GFF7291at 9.948 kb on + strand, within GFF7291at 9.948 kb on + strand, within GFF7291at 9.948 kb on + strand, within GFF7291at 9.949 kb on - strand, within GFF7291at 10.290 kb on + strand, within GFF7291at 10.290 kb on + strand, within GFF7291at 10.291 kb on - strand, within GFF7291at 10.291 kb on - strand, within GFF7291at 10.291 kb on - strand, within GFF7291at 10.293 kb on + strand, within GFF7291at 10.293 kb on + strand, within GFF7291at 10.293 kb on + strand, within GFF7291at 10.293 kb on + strand, within GFF7291at 10.294 kb on - strand, within GFF7291at 10.294 kb on - strand, within GFF7291at 10.294 kb on - strand, within GFF7291

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
7,673 - +0.5
7,729 - -0.1
8,477 + GFF7289 0.79 -0.8
8,477 + GFF7289 0.79 +0.3
8,478 - GFF7289 0.79 +0.1
8,577 - -0.0
8,658 - +1.2
8,731 + GFF7290 0.14 -0.3
8,731 + GFF7290 0.14 +0.0
8,731 + GFF7290 0.14 +0.4
8,732 - GFF7290 0.14 +0.3
8,858 - GFF7290 0.31 +0.1
9,256 + GFF7290 0.84 -0.5
9,256 + GFF7290 0.84 +1.4
9,256 + GFF7290 0.84 +0.2
9,256 + GFF7290 0.84 -0.4
9,256 + GFF7290 0.84 -0.4
9,256 + GFF7290 0.84 -0.3
9,256 + GFF7290 0.84 -0.1
9,256 + GFF7290 0.84 +0.0
9,256 + GFF7290 0.84 +0.8
9,256 + GFF7290 0.84 +1.0
9,256 + GFF7290 0.84 +0.4
9,256 + GFF7290 0.84 +1.5
9,256 + GFF7290 0.84 -0.3
9,256 + GFF7290 0.84 +0.4
9,257 - GFF7290 0.84 -0.4
9,257 - GFF7290 0.84 -0.9
9,257 - GFF7290 0.84 +0.7
9,257 - GFF7290 0.84 -0.1
9,257 - GFF7290 0.84 -0.0
9,257 - GFF7290 0.84 -0.2
9,257 - GFF7290 0.84 -1.5
9,257 - GFF7290 0.84 +1.3
9,257 - GFF7290 0.84 -0.0
9,257 - GFF7290 0.84 -0.5
9,257 - GFF7290 0.84 -0.1
9,257 - GFF7290 0.84 +0.0
9,257 - GFF7290 0.84 +1.2
9,257 - GFF7290 0.84 -1.1
9,257 - GFF7290 0.84 +0.6
9,257 - GFF7290 0.84 +0.5
9,418 + +0.8
9,418 + -0.5
9,418 + +0.2
9,418 + +2.0
9,419 - -0.8
9,474 + -0.2
9,474 + -0.4
9,474 + +0.2
9,474 + +0.2
9,474 + +2.0
9,475 - -0.3
9,475 - +0.6
9,520 - +0.1
9,525 + +0.1
9,573 + GFF7291 0.13 +0.3
9,573 + GFF7291 0.13 +0.2
9,573 + GFF7291 0.13 -0.4
9,573 + GFF7291 0.13 +0.1
9,573 + GFF7291 0.13 -1.1
9,573 + GFF7291 0.13 +0.2
9,948 + GFF7291 0.51 -0.1
9,948 + GFF7291 0.51 -0.1
9,948 + GFF7291 0.51 +0.6
9,948 + GFF7291 0.51 -0.3
9,949 - GFF7291 0.51 -0.9
10,290 + GFF7291 0.86 +0.2
10,290 + GFF7291 0.86 -0.3
10,291 - GFF7291 0.86 -0.2
10,291 - GFF7291 0.86 +0.5
10,291 - GFF7291 0.86 +0.4
10,293 + GFF7291 0.86 -1.0
10,293 + GFF7291 0.86 +0.2
10,293 + GFF7291 0.86 -1.0
10,293 + GFF7291 0.86 +0.2
10,294 - GFF7291 0.86 +0.4
10,294 - GFF7291 0.86 -1.0
10,294 - GFF7291 0.86 -0.5

Or see this region's nucleotide sequence