Strain Fitness in Variovorax sp. SCN45 around GFF7282

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
52	+		GFF7282	0.40	+0.1
52	+		GFF7282	0.40	-0.6
52	+		GFF7282	0.40	-1.4
52	+		GFF7282	0.40	+1.3
52	+		GFF7282	0.40	+0.4
88	-		GFF7282	0.69	+0.8
105	+		GFF7282	0.83	+3.0
106	-		GFF7282	0.83	-0.0
124	+				-0.3
124	+				-0.4
124	+				+0.2
124	+				-1.2
124	+				+0.5
125	-				+0.1
125	-				-0.3
125	-				-0.6
254	-				+0.4
276	+				+0.2
276	+				-0.5
277	-				-0.3
334	+				-0.5
334	+				+0.6
334	+				-0.1
335	-				-0.7
335	-				-0.1
352	+				+0.3
352	+				-0.8
353	-				+0.1
353	-				+2.3
353	-				-0.8
419	-		GFF7283	0.11	-0.7
419	-		GFF7283	0.11	+0.2
547	+		GFF7283	0.19	-1.5
547	+		GFF7283	0.19	-1.4
548	-		GFF7283	0.19	-0.3
721	+		GFF7283	0.29	-0.3
721	+		GFF7283	0.29	-2.3
721	+		GFF7283	0.29	+1.2
721	+		GFF7283	0.29	+0.8
721	+		GFF7283	0.29	+0.1
721	+		GFF7283	0.29	+1.0
721	+		GFF7283	0.29	-1.0
722	-		GFF7283	0.30	-0.2
722	-		GFF7283	0.30	+0.0
722	-		GFF7283	0.30	+0.2
722	-		GFF7283	0.30	-0.9
862	+		GFF7283	0.38	+0.1
862	+		GFF7283	0.38	+0.5
862	+		GFF7283	0.38	-0.7
862	+		GFF7283	0.38	-0.4
862	+		GFF7283	0.38	+0.6
862	+		GFF7283	0.38	-0.6
862	+		GFF7283	0.38	+0.8
863	-		GFF7283	0.38	-0.6
863	-		GFF7283	0.38	+0.2
1,015	+		GFF7283	0.47	-1.2
1,015	+		GFF7283	0.47	-0.3
1,015	+		GFF7283	0.47	-0.4
1,016	-		GFF7283	0.47	+1.8
1,016	-		GFF7283	0.47	+0.4