Strain Fitness in Variovorax sp. SCN45 around GFF7165

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
28,229	-		GFF7163	0.68	-0.6
28,392	+				-0.5
28,392	+				-0.1
28,392	+				+0.3
28,392	+				+0.8
28,392	+				-0.0
28,392	+				-1.0
28,392	+				+1.2
28,393	-				+0.6
28,393	-				-0.4
28,393	-				-1.1
28,393	-				+1.1
28,430	+				+0.5
28,430	+				-0.3
28,430	+				+1.6
28,430	+				+0.7
28,430	+				+0.1
28,431	-				-0.8
28,431	-				-0.1
28,431	-				+0.4
28,431	-				+0.0
28,431	-				+0.2
28,431	-				-0.8
28,431	-				+1.0
28,461	+		GFF7164	0.10	-0.5
28,461	+		GFF7164	0.10	-2.1
28,461	+		GFF7164	0.10	-0.2
28,461	+		GFF7164	0.10	+0.3
28,461	+		GFF7164	0.10	-0.5
28,462	-		GFF7164	0.10	-0.2
28,503	+		GFF7164	0.16	+0.1
28,503	+		GFF7164	0.16	-0.3
28,504	-		GFF7164	0.16	+0.1
28,504	-		GFF7164	0.16	-0.3
28,504	-		GFF7164	0.16	+1.1
28,536	+		GFF7164	0.21	+0.7
28,536	+		GFF7164	0.21	+0.5
28,536	+		GFF7164	0.21	-0.4
28,536	+		GFF7164	0.21	-0.1
28,536	+		GFF7164	0.21	+0.6
28,536	+		GFF7164	0.21	+0.5
28,537	-		GFF7164	0.21	-1.5
28,537	-		GFF7164	0.21	-0.4
28,537	-		GFF7164	0.21	-1.4
28,537	-		GFF7164	0.21	+0.2
28,537	-		GFF7164	0.21	+0.2
28,537	-		GFF7164	0.21	+0.5
28,537	-		GFF7164	0.21	-0.6
28,545	+		GFF7164	0.22	-0.5
28,545	+		GFF7164	0.22	+0.1
28,546	-		GFF7164	0.23	+0.2
28,546	-		GFF7164	0.23	-0.4
28,546	-		GFF7164	0.23	-0.1
28,546	-		GFF7164	0.23	-0.8
28,546	-		GFF7164	0.23	-0.2
28,546	-		GFF7164	0.23	+0.2
28,881	+		GFF7164	0.71	-0.8
28,882	-		GFF7164	0.71	-0.3
28,882	-		GFF7164	0.71	-0.4
29,087	+				-0.5
29,087	+				-0.4
29,087	+				-0.1
29,088	-				+0.1
29,088	-				-0.7
29,225	+				-0.8
29,225	+				-1.1
29,226	-				-0.4
29,297	+		GFF7165	0.13	-1.4
29,297	+		GFF7165	0.13	+0.6
29,298	-		GFF7165	0.13	-0.4
29,298	-		GFF7165	0.13	-0.4
29,298	-		GFF7165	0.13	-0.8
29,298	-		GFF7165	0.13	-1.2
29,357	+		GFF7165	0.17	+0.9
29,357	+		GFF7165	0.17	+0.5
29,358	-		GFF7165	0.17	-0.8
29,358	-		GFF7165	0.17	-0.9
29,358	-		GFF7165	0.17	+0.9
29,358	-		GFF7165	0.17	+0.7
29,358	-		GFF7165	0.17	+0.6
29,358	-		GFF7165	0.17	-1.5
29,797	+		GFF7165	0.45	+0.0
29,845	-		GFF7165	0.48	-1.4
30,289	+		GFF7165	0.76	+0.5
30,289	+		GFF7165	0.76	-0.3
30,289	+		GFF7165	0.76	-1.5
30,289	+		GFF7165	0.76	-0.3
30,289	+		GFF7165	0.76	-0.2
30,289	+		GFF7165	0.76	-0.3
30,289	+		GFF7165	0.76	-1.8
30,289	+		GFF7165	0.76	+0.6
30,289	+		GFF7165	0.76	+0.5
30,290	-		GFF7165	0.76	-0.2
30,290	-		GFF7165	0.76	+0.1
30,290	-		GFF7165	0.76	-0.0
30,290	-		GFF7165	0.76	-2.6
30,290	-		GFF7165	0.76	-0.6
30,290	-		GFF7165	0.76	-0.5
30,290	-		GFF7165	0.76	-2.1
30,290	-		GFF7165	0.76	-1.0
30,290	-		GFF7165	0.76	-0.6
30,566	+				-1.3
30,567	-				+0.0
30,567	-				+0.2
30,567	-				-0.3
30,669	+				-1.1
30,707	+				-0.5
30,707	+				-0.5
30,755	+				-1.1
30,755	+				-0.4
30,907	+		GFF7166	0.18	+0.7
30,907	+		GFF7166	0.18	-1.0
30,907	+		GFF7166	0.18	+1.0
30,907	+		GFF7166	0.18	-0.2
30,907	+		GFF7166	0.18	-0.3
30,907	+		GFF7166	0.18	-0.4
30,908	-		GFF7166	0.19	-0.2
30,908	-		GFF7166	0.19	+0.5
31,150	+		GFF7166	0.76	-0.7
31,150	+		GFF7166	0.76	-0.2
31,150	+		GFF7166	0.76	-0.2
31,150	+		GFF7166	0.76	-0.1
31,151	-		GFF7166	0.76	+0.5
31,151	-		GFF7166	0.76	+0.2
31,151	-		GFF7166	0.76	+0.2
31,151	-		GFF7166	0.76	-0.5
31,151	-		GFF7166	0.76	-1.2
31,151	-		GFF7166	0.76	+0.5
31,151	-		GFF7166	0.76	+1.0
31,151	-		GFF7166	0.76	-0.3
31,162	+		GFF7166	0.79	-0.5
31,162	+		GFF7166	0.79	-0.2
31,162	+		GFF7166	0.79	-0.4
31,162	+		GFF7166	0.79	-0.5
31,162	+		GFF7166	0.79	+2.6
31,162	+		GFF7166	0.79	-0.6
31,162	+		GFF7166	0.79	+0.2
31,162	+		GFF7166	0.79	-0.7
31,162	+		GFF7166	0.79	-0.4
31,162	+		GFF7166	0.79	-0.3
31,162	+		GFF7166	0.79	-0.0
31,162	+		GFF7166	0.79	-0.4
31,162	+		GFF7166	0.79	+0.8
31,162	+		GFF7166	0.79	-0.2
31,163	-		GFF7166	0.79	-0.1
31,163	-		GFF7166	0.79	-0.6
31,163	-		GFF7166	0.79	-0.3
31,163	-		GFF7166	0.79	-1.1
31,163	-		GFF7166	0.79	-0.6
31,163	-		GFF7166	0.79	-0.6
31,163	-		GFF7166	0.79	-1.3
31,163	-		GFF7166	0.79	+0.5
31,210	+				+0.2
31,210	+				-2.8
31,210	+				+0.5
31,210	+				+0.1
31,210	+				+0.2
31,210	+				-0.2
31,210	+				+0.5
31,210	+				-1.3
31,210	+				-1.8
31,210	+				-1.3
31,210	+				-1.3
31,210	+				-0.5
31,210	+				-0.8
31,210	+				-0.8
31,210	+				-0.4
31,210	+				-1.0
31,210	+				-0.5
31,210	+				+0.8
31,210	+				+0.5
31,210	+				+0.2
31,210	+				+0.7
31,210	+				-0.4
31,210	+				-1.2
31,210	+				-1.4
31,210	+				+0.2
31,210	+				-1.2
31,210	+				+0.7
31,210	+				-0.1
31,210	+				-0.5
31,210	+				+0.9
31,210	+				+0.5
31,211	-				-1.5
31,211	-				+2.0
31,211	-				-0.3
31,211	-				+0.5
31,211	-				-0.6
31,211	-				-0.9
31,211	-				+0.2
31,211	-				+0.0
31,211	-				-1.4
31,211	-				-0.4
31,211	-				+0.9
31,211	-				-0.2
31,211	-				-0.4
31,211	-				+2.8
31,211	-				-0.0
31,211	-				-0.2
31,211	-				-0.3
31,211	-				-0.2
31,211	-				-0.3
31,211	-				-0.4
31,211	-				-0.2
31,211	-				+0.9
31,211	-				+0.2
31,211	-				+0.5
31,211	-				+3.0
31,211	-				-0.4
31,211	-				-0.6
31,211	-				-0.7
31,211	-				-0.2
31,211	-				+0.5
31,211	-				+1.0
31,211	-				-0.4
31,298	+				-0.1
31,330	+				+0.2
31,331	-				+0.1
31,405	+				-0.5
31,405	+				+0.0
31,405	+				+1.0
31,405	+				-0.1
31,406	-				-0.8
31,406	-				-0.1
31,406	-				+0.1
31,499	+				-0.1
31,499	+				+0.6
31,499	+				-0.4
31,500	-				-0.2
31,500	-				+0.7
31,514	+				+0.6
31,514	+				-0.6
31,607	+		GFF7167	0.18	-0.1
31,607	+		GFF7167	0.18	+0.4
31,607	+		GFF7167	0.18	-1.1
31,607	+		GFF7167	0.18	-0.1
31,607	+		GFF7167	0.18	+0.0
31,607	+		GFF7167	0.18	-0.2
31,607	+		GFF7167	0.18	-1.5
31,607	+		GFF7167	0.18	-0.9
31,607	+		GFF7167	0.18	-0.4
31,607	+		GFF7167	0.18	-1.0
31,607	+		GFF7167	0.18	-0.3
31,607	+		GFF7167	0.18	-0.6
31,608	-		GFF7167	0.19	-1.4
31,608	-		GFF7167	0.19	-0.1
31,608	-		GFF7167	0.19	+0.3
31,608	-		GFF7167	0.19	+0.3
31,608	-		GFF7167	0.19	+0.3
31,608	-		GFF7167	0.19	+0.0
31,608	-		GFF7167	0.19	-0.1
31,608	-		GFF7167	0.19	+0.1
31,608	-		GFF7167	0.19	-0.5
31,608	-		GFF7167	0.19	+0.8