Strain Fitness in Variovorax sp. SCN45 around GFF7100

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
17,717	+		GFF7098	0.39	-0.2
17,717	+		GFF7098	0.39	+1.6
17,717	+		GFF7098	0.39	+0.0
17,717	+		GFF7098	0.39	-0.2
17,717	+		GFF7098	0.39	-0.1
17,717	+		GFF7098	0.39	+0.1
17,717	+		GFF7098	0.39	-0.1
17,717	+		GFF7098	0.39	+0.2
17,717	+		GFF7098	0.39	-0.4
17,717	+		GFF7098	0.39	-0.5
17,718	-		GFF7098	0.39	-0.4
17,718	-		GFF7098	0.39	-1.1
17,718	-		GFF7098	0.39	+1.0
17,718	-		GFF7098	0.39	+1.2
17,718	-		GFF7098	0.39	-0.0
17,718	-		GFF7098	0.39	-0.6
17,718	-		GFF7098	0.39	-0.1
17,718	-		GFF7098	0.39	-0.4
17,718	-		GFF7098	0.39	-0.1
17,795	+		GFF7098	0.49	+0.0
17,795	+		GFF7098	0.49	-0.5
17,795	+		GFF7098	0.49	+0.0
17,795	+		GFF7098	0.49	-0.6
17,795	+		GFF7098	0.49	+0.3
17,795	+		GFF7098	0.49	-0.1
17,795	+		GFF7098	0.49	+0.1
17,796	-		GFF7098	0.49	+0.7
17,796	-		GFF7098	0.49	+0.6
17,796	-		GFF7098	0.49	+0.1
17,796	-		GFF7098	0.49	+0.3
17,796	-		GFF7098	0.49	+0.1
17,984	+		GFF7098	0.71	-1.0
17,985	-		GFF7098	0.71	-0.1
18,105	-		GFF7098	0.86	+0.2
18,313	+				-0.3
18,313	+				+0.0
18,440	+		GFF7099	0.39	+0.1
18,441	-		GFF7099	0.40	-0.3
18,441	-		GFF7099	0.40	+0.2
18,469	+		GFF7099	0.46	-0.6
18,469	+		GFF7099	0.46	-0.6
18,469	+		GFF7099	0.46	-1.3
18,469	+		GFF7099	0.46	+0.1
18,470	-		GFF7099	0.46	+0.0
18,470	-		GFF7099	0.46	-0.4
18,470	-		GFF7099	0.46	-0.7
18,481	+		GFF7099	0.49	-0.2
18,481	+		GFF7099	0.49	+0.5
18,482	-		GFF7099	0.49	+1.4
18,557	-		GFF7099	0.66	-0.1
18,557	-		GFF7099	0.66	-0.9
18,679	+				-0.1
18,679	+				-0.3
18,866	+		GFF7100	0.20	+0.3
18,866	+		GFF7100	0.20	+0.1
18,867	-		GFF7100	0.20	-0.8
19,212	+		GFF7100	0.62	+2.3
19,295	+		GFF7100	0.72	-0.2
19,296	-		GFF7100	0.72	+2.0
19,296	-		GFF7100	0.72	+3.4
19,430	+		GFF7100	0.89	-0.0
19,431	-		GFF7100	0.89	-1.1
19,431	-		GFF7100	0.89	-0.6
19,431	-		GFF7100	0.89	+4.0
19,525	+				+0.0
19,526	-				-0.4
19,526	-				-1.1
19,591	+		GFF7101	0.20	+0.3
19,592	-		GFF7101	0.21	-0.7
19,624	+		GFF7101	0.31	-1.3
19,624	+		GFF7101	0.31	+0.2
19,624	+		GFF7101	0.31	-0.0
19,625	-		GFF7101	0.31	-0.3
19,625	-		GFF7101	0.31	-0.7
19,625	-		GFF7101	0.31	-1.1
19,625	-		GFF7101	0.31	-0.5
19,665	+		GFF7101	0.43	+1.5
19,666	-		GFF7101	0.43	-0.3
19,666	-		GFF7101	0.43	+1.6
19,666	-		GFF7101	0.43	+0.1
19,693	+		GFF7101	0.52	-1.6
19,693	+		GFF7101	0.52	-0.2
19,694	-		GFF7101	0.52	-0.0
19,694	-		GFF7101	0.52	-0.3
19,694	-		GFF7101	0.52	-0.9
19,694	-		GFF7101	0.52	-0.9
19,694	-		GFF7101	0.52	-0.8
19,694	-		GFF7101	0.52	-0.7
19,717	+		GFF7101	0.59	-0.1
19,730	-		GFF7101	0.63	-0.4
19,751	-		GFF7101	0.69	+0.2
19,835	+				-0.7
19,836	-				+1.0
19,840	+				+0.1
19,840	+				-0.7
19,840	+				-0.1
19,840	+				+0.0
19,841	-				-1.1
19,841	-				-0.2
19,841	-				+0.6
19,841	-				-0.7
19,958	-				-0.6
19,958	-				+0.1
19,958	-				+0.4
19,958	-				-1.3
19,958	-				-0.8
19,958	-				-0.4
20,113	+		GFF7102	0.16	-0.6
20,113	+		GFF7102	0.16	-0.3
20,129	-		GFF7102	0.17	+0.2
20,353	+		GFF7102	0.32	-0.0
20,353	+		GFF7102	0.32	-0.1
20,354	-		GFF7102	0.32	-0.6
20,354	-		GFF7102	0.32	-0.5
20,354	-		GFF7102	0.32	-0.2
20,354	-		GFF7102	0.32	-0.0
20,476	+		GFF7102	0.40	-1.2