Strain Fitness in Variovorax sp. SCN45 around GFF7032

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
50,806	+				+0.2
50,806	+				+0.2
50,806	+				-0.4
50,806	+				-0.3
50,807	-				-1.3
50,807	-				-1.0
50,825	-				-1.9
50,825	-				-0.1
50,846	-				+0.8
50,858	+				-1.6
50,858	+				-1.5
50,858	+				-0.1
50,858	+				-1.8
50,858	+				+0.9
50,859	-				-0.5
50,859	-				-0.4
50,859	-				-0.7
50,859	-				+1.8
50,866	+				-0.1
50,867	-				-0.3
51,002	-				-2.2
51,039	+				-1.5
51,040	-				-0.5
51,047	+				-0.6
51,047	+				+0.5
51,047	+				+0.7
51,047	+				+1.3
51,048	-				-0.3
51,048	-				+0.9
51,048	-				-0.5
51,048	-				-1.1
51,152	+				+0.1
51,152	+				-0.4
51,152	+				-0.2
51,152	+				+1.8
51,153	-				-0.1
51,153	-				+0.4
51,153	-				+0.5
51,153	-				-0.5
51,153	-				+0.8
51,153	-				+0.5
51,153	-				+1.2
51,161	+				-1.9
51,161	+				+0.2
51,161	+				+0.1
51,162	-				+0.9
51,162	-				-0.9
51,162	-				-0.1
51,180	+				-0.8
51,180	+				-0.2
51,180	+				-0.0
51,181	-				+0.0
51,181	-				+0.0
51,181	-				-0.3
51,181	-				+0.5
51,181	-				-0.8
51,181	-				+0.7
51,184	+				+0.6
51,184	+				+0.8
51,184	+				+0.5
51,184	+				-1.1
51,184	+				+0.1
51,184	+				+0.2
51,184	+				-0.3
51,185	-				-0.5
51,185	-				-0.4
51,185	-				+0.4
51,185	-				-0.8
51,185	-				+2.2
51,185	-				-0.4
51,185	-				-0.3
51,185	-				-0.3
51,185	-				-0.1
51,185	-				-0.3
51,250	+				-1.0
51,250	+				-0.3
51,251	-				+0.5
51,251	-				+0.4
51,251	-				-0.7
51,356	+				-0.8
51,356	+				-0.3
51,356	+				+0.1
51,356	+				+1.8
51,356	+				-1.2
51,356	+				+0.6
51,356	+				-2.7
51,356	+				+1.8
51,357	-				-0.8
51,357	-				-0.2
51,357	-				+0.5
51,357	-				-1.6
51,357	-				-0.7
51,357	-				+0.5
51,357	-				+1.3
51,357	-				-0.3
51,357	-				+0.0
51,357	-				+1.8
51,446	+				+0.0
51,446	+				+0.9
51,446	+				-1.3
51,447	-				-0.2
51,447	-				-0.1
51,471	+				-0.1
51,472	-				-0.5
51,472	-				+0.2
51,472	-				+0.4
51,482	-				-0.5
51,482	-				-0.7
51,529	+				-0.5
51,529	+				-0.1
51,529	+				+0.3
51,529	+				-0.0
51,529	+				-1.3
51,529	+				-0.2
51,529	+				-0.3
51,529	+				-0.5
51,530	-				-0.3
51,530	-				-0.8
51,530	-				-1.2
51,530	-				-0.3
51,530	-				+0.1
51,530	-				-1.4
51,772	+		GFF7032	0.15	-0.3
51,806	+		GFF7032	0.24	-1.4
51,807	-		GFF7032	0.25	+0.6
51,917	+		GFF7032	0.55	+0.5
51,917	+		GFF7032	0.55	-1.5
51,921	+		GFF7032	0.57	-1.6
51,921	+		GFF7032	0.57	+1.2
51,921	+		GFF7032	0.57	-1.1
51,921	+		GFF7032	0.57	+1.8
51,921	+		GFF7032	0.57	-0.0
51,921	+		GFF7032	0.57	+0.3
51,921	+		GFF7032	0.57	-0.3
51,921	+		GFF7032	0.57	+1.2
51,922	-		GFF7032	0.57	+1.2
51,922	-		GFF7032	0.57	-1.0
51,922	-		GFF7032	0.57	-1.6
51,922	-		GFF7032	0.57	-1.4
51,922	-		GFF7032	0.57	+0.2
51,922	-		GFF7032	0.57	+0.2
51,922	-		GFF7032	0.57	+0.6
51,972	+		GFF7032	0.71	-0.2
51,972	+		GFF7032	0.71	-0.3
51,972	+		GFF7032	0.71	-0.2
51,972	+		GFF7032	0.71	+0.6
51,972	+		GFF7032	0.71	-0.9
51,972	+		GFF7032	0.71	+0.1
51,973	-		GFF7032	0.71	+0.4
51,973	-		GFF7032	0.71	+0.3
51,973	-		GFF7032	0.71	-0.3
51,973	-		GFF7032	0.71	+0.4
51,973	-		GFF7032	0.71	+0.8
51,973	-		GFF7032	0.71	+1.2
51,973	-		GFF7032	0.71	-0.6
52,061	+				+0.5
52,062	-				+0.6
52,062	-				+0.2
52,062	-				-1.0
52,120	+				+1.3
52,120	+				+0.9
52,120	+				+0.4
52,120	+				-0.4
52,120	+				-0.5
52,120	+				+0.7
52,120	+				-0.2
52,120	+				-1.1
52,120	+				+0.1
52,121	-				-0.2
52,121	-				+0.6
52,121	-				+0.1
52,121	-				-0.4
52,121	-				-0.5
52,121	-				-0.7
52,121	-				+0.3
52,121	-				+0.7
52,121	-				+0.0
52,121	-				+0.3
52,121	-				+0.6
52,121	-				-0.7
52,121	-				-0.3
52,121	-				-1.3
52,128	+				+0.5
52,128	+				-1.1
52,128	+				-1.0
52,128	+				+0.2
52,128	+				+0.7
52,129	-				+0.3
52,129	-				-0.4
52,129	-				-0.1
52,129	-				-0.0
52,264	-				-0.3
52,264	-				+0.7
52,264	-				-0.8
52,264	-				-0.2
52,264	-				+0.1