Strain Fitness in Variovorax sp. SCN45 around GFF6927

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
5,809	-				-1.3
6,039	+		GFF6926	0.32	-0.1
6,039	+		GFF6926	0.32	-0.2
6,039	+		GFF6926	0.32	-0.5
6,039	+		GFF6926	0.32	-0.6
6,039	+		GFF6926	0.32	+0.1
6,039	+		GFF6926	0.32	-0.3
6,039	+		GFF6926	0.32	+0.2
6,039	+		GFF6926	0.32	+0.3
6,040	-		GFF6926	0.32	+0.3
6,040	-		GFF6926	0.32	+1.6
6,040	-		GFF6926	0.32	+1.1
6,040	-		GFF6926	0.32	-0.5
6,040	-		GFF6926	0.32	+1.3
6,040	-		GFF6926	0.32	+0.1
6,040	-		GFF6926	0.32	+0.7
6,040	-		GFF6926	0.32	-0.1
6,087	+		GFF6926	0.37	-0.7
6,087	+		GFF6926	0.37	-0.1
6,186	+		GFF6926	0.48	-0.3
6,187	-		GFF6926	0.49	-1.2
6,478	-		GFF6926	0.81	+1.2
6,478	-		GFF6926	0.81	-3.0
6,478	-		GFF6926	0.81	-1.2
6,531	+		GFF6926	0.87	+1.0
6,532	-		GFF6926	0.87	+0.1
6,588	+				-1.6
6,588	+				-0.1
6,588	+				-0.6
6,588	+				-0.4
6,588	+				-0.6
6,588	+				-0.1
6,589	-				-1.2
6,589	-				+0.8
6,589	-				+0.3
6,589	-				-0.9
6,930	+		GFF6927	0.60	-1.0
6,930	+		GFF6927	0.60	-0.3
6,931	-		GFF6927	0.61	-1.4
6,931	-		GFF6927	0.61	-0.3
6,931	-		GFF6927	0.61	+0.6
6,984	-		GFF6927	0.77	-0.4
6,984	-		GFF6927	0.77	-0.7
7,028	+				+0.8
7,029	-				+0.3
7,037	+				-0.0
7,037	+				+0.4
7,037	+				+0.1
7,037	+				+0.5
7,037	+				-2.3
7,261	+		GFF6928	0.47	-1.4
7,262	-		GFF6928	0.47	+1.3
7,262	-		GFF6928	0.47	+0.0
7,262	-		GFF6928	0.47	-0.2
7,262	-		GFF6928	0.47	+0.3