Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6899 and GFF6900 overlap by 4 nucleotides GFF6900 and GFF6901 overlap by 11 nucleotides GFF6901 and GFF6902 are separated by 108 nucleotides
GFF6899 - Biofilm PGA synthesis deacetylase PgaB (EC 3.-), at 33,092 to 35,161
GFF6899
GFF6900 - Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-), at 35,158 to 36,435
GFF6900
GFF6901 - no description, at 36,425 to 37,009
GFF6901
GFF6902 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 37,118 to 37,915
GFF6902
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 34.178 kb on + strand, within GFF6899 at 34.178 kb on + strand, within GFF6899 at 34.178 kb on + strand, within GFF6899 at 34.179 kb on - strand, within GFF6899 at 34.179 kb on - strand, within GFF6899 at 34.179 kb on - strand, within GFF6899 at 34.217 kb on + strand, within GFF6899 at 34.217 kb on + strand, within GFF6899 at 34.217 kb on + strand, within GFF6899 at 34.217 kb on + strand, within GFF6899 at 34.217 kb on + strand, within GFF6899 at 34.217 kb on + strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.403 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.475 kb on + strand, within GFF6899 at 34.475 kb on + strand, within GFF6899 at 34.476 kb on - strand, within GFF6899 at 34.476 kb on - strand, within GFF6899 at 34.559 kb on + strand, within GFF6899 at 34.559 kb on + strand, within GFF6899 at 34.559 kb on + strand, within GFF6899 at 34.559 kb on + strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.646 kb on + strand, within GFF6899 at 34.647 kb on - strand, within GFF6899 at 34.724 kb on + strand, within GFF6899 at 34.724 kb on + strand, within GFF6899 at 34.725 kb on - strand, within GFF6899 at 34.725 kb on - strand, within GFF6899 at 34.725 kb on - strand, within GFF6899 at 34.775 kb on + strand, within GFF6899 at 34.775 kb on + strand, within GFF6899 at 34.775 kb on + strand, within GFF6899 at 34.775 kb on + strand, within GFF6899 at 34.776 kb on - strand, within GFF6899 at 34.776 kb on - strand, within GFF6899 at 34.776 kb on - strand, within GFF6899 at 34.776 kb on - strand, within GFF6899 at 34.776 kb on - strand, within GFF6899 at 34.776 kb on - strand, within GFF6899 at 34.796 kb on + strand, within GFF6899 at 34.796 kb on + strand, within GFF6899 at 34.796 kb on + strand, within GFF6899 at 34.802 kb on + strand, within GFF6899 at 34.802 kb on + strand, within GFF6899 at 34.802 kb on + strand, within GFF6899 at 34.802 kb on + strand, within GFF6899 at 34.802 kb on + strand, within GFF6899 at 34.803 kb on - strand, within GFF6899 at 35.021 kb on + strand at 35.022 kb on - strand at 35.022 kb on - strand at 35.024 kb on + strand at 35.024 kb on + strand at 35.024 kb on + strand at 35.024 kb on + strand at 35.025 kb on - strand at 35.218 kb on + strand at 35.218 kb on + strand at 35.218 kb on + strand at 35.218 kb on + strand at 35.218 kb on + strand at 35.218 kb on + strand at 35.218 kb on + strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.222 kb on - strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.422 kb on + strand, within GFF6900 at 35.422 kb on + strand, within GFF6900 at 35.422 kb on + strand, within GFF6900 at 35.422 kb on + strand, within GFF6900 at 35.422 kb on + strand, within GFF6900 at 35.422 kb on + strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.494 kb on + strand, within GFF6900 at 35.494 kb on + strand, within GFF6900 at 35.494 kb on + strand, within GFF6900 at 35.495 kb on - strand, within GFF6900 at 35.495 kb on - strand, within GFF6900 at 35.581 kb on + strand, within GFF6900 at 35.581 kb on + strand, within GFF6900 at 35.581 kb on + strand, within GFF6900 at 35.581 kb on + strand, within GFF6900 at 35.581 kb on + strand, within GFF6900 at 35.582 kb on - strand, within GFF6900 at 35.582 kb on - strand, within GFF6900 at 35.582 kb on - strand, within GFF6900 at 35.582 kb on - strand, within GFF6900 at 35.582 kb on - strand, within GFF6900 at 35.582 kb on - strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.077 kb on - strand, within GFF6900 at 36.077 kb on - strand, within GFF6900 at 36.077 kb on - strand, within GFF6900 at 36.077 kb on - strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.086 kb on - strand, within GFF6900 at 36.086 kb on - strand, within GFF6900 at 36.086 kb on - strand, within GFF6900 at 36.110 kb on - strand, within GFF6900 at 36.110 kb on - strand, within GFF6900 at 36.265 kb on + strand, within GFF6900 at 36.266 kb on - strand, within GFF6900 at 36.266 kb on - strand, within GFF6900 at 36.286 kb on + strand, within GFF6900 at 36.286 kb on + strand, within GFF6900 at 36.287 kb on - strand, within GFF6900 at 36.287 kb on - strand, within GFF6900 at 36.371 kb on + strand at 36.371 kb on + strand at 36.371 kb on + strand at 36.371 kb on + strand at 36.371 kb on + strand at 36.371 kb on + strand at 36.372 kb on - strand at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.680 kb on + strand, within GFF6901 at 36.680 kb on + strand, within GFF6901 at 36.680 kb on + strand, within GFF6901 at 36.681 kb on - strand, within GFF6901 at 36.681 kb on - strand, within GFF6901 at 36.731 kb on + strand, within GFF6901 at 36.731 kb on + strand, within GFF6901 at 36.731 kb on + strand, within GFF6901 at 36.731 kb on + strand, within GFF6901 at 36.732 kb on - strand, within GFF6901 at 36.854 kb on + strand, within GFF6901 at 36.854 kb on + strand, within GFF6901 at 36.855 kb on - strand, within GFF6901 at 36.855 kb on - strand, within GFF6901 at 36.855 kb on - strand, within GFF6901 at 36.855 kb on - strand, within GFF6901 at 36.855 kb on - strand, within GFF6901 at 36.855 kb on - strand, within GFF6901 at 37.146 kb on + strand at 37.146 kb on + strand at 37.146 kb on + strand at 37.146 kb on + strand at 37.146 kb on + strand at 37.146 kb on + strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 34,178 + GFF6899 0.52 +0.9 34,178 + GFF6899 0.52 +0.2 34,178 + GFF6899 0.52 +0.5 34,179 - GFF6899 0.53 +0.1 34,179 - GFF6899 0.53 -0.8 34,179 - GFF6899 0.53 -0.4 34,217 + GFF6899 0.54 -0.5 34,217 + GFF6899 0.54 +0.1 34,217 + GFF6899 0.54 -0.1 34,217 + GFF6899 0.54 +1.1 34,217 + GFF6899 0.54 +0.3 34,217 + GFF6899 0.54 +0.1 34,218 - GFF6899 0.54 +0.1 34,218 - GFF6899 0.54 -0.5 34,218 - GFF6899 0.54 -2.1 34,218 - GFF6899 0.54 +0.6 34,218 - GFF6899 0.54 +1.9 34,218 - GFF6899 0.54 -0.6 34,218 - GFF6899 0.54 -0.4 34,304 + GFF6899 0.59 -0.5 34,304 + GFF6899 0.59 -1.9 34,304 + GFF6899 0.59 -0.1 34,304 + GFF6899 0.59 +0.0 34,304 + GFF6899 0.59 -0.3 34,304 + GFF6899 0.59 +0.6 34,304 + GFF6899 0.59 +0.1 34,304 + GFF6899 0.59 -0.2 34,304 + GFF6899 0.59 +0.2 34,304 + GFF6899 0.59 -0.2 34,304 + GFF6899 0.59 +1.2 34,304 + GFF6899 0.59 +0.6 34,304 + GFF6899 0.59 +0.5 34,305 - GFF6899 0.59 +0.2 34,305 - GFF6899 0.59 -0.4 34,305 - GFF6899 0.59 +0.8 34,305 - GFF6899 0.59 -0.4 34,305 - GFF6899 0.59 -0.4 34,305 - GFF6899 0.59 +0.1 34,305 - GFF6899 0.59 -0.5 34,305 - GFF6899 0.59 -0.1 34,305 - GFF6899 0.59 +0.4 34,403 + GFF6899 0.63 -1.5 34,457 + GFF6899 0.66 +0.9 34,457 + GFF6899 0.66 +0.2 34,457 + GFF6899 0.66 +0.8 34,457 + GFF6899 0.66 +0.5 34,457 + GFF6899 0.66 -0.1 34,457 + GFF6899 0.66 +0.1 34,457 + GFF6899 0.66 +0.6 34,457 + GFF6899 0.66 +1.2 34,457 + GFF6899 0.66 +0.4 34,457 + GFF6899 0.66 -0.1 34,458 - GFF6899 0.66 -1.0 34,458 - GFF6899 0.66 +0.2 34,458 - GFF6899 0.66 -0.5 34,458 - GFF6899 0.66 -0.2 34,458 - GFF6899 0.66 +1.7 34,458 - GFF6899 0.66 +0.8 34,458 - GFF6899 0.66 -0.3 34,458 - GFF6899 0.66 -0.8 34,475 + GFF6899 0.67 +0.0 34,475 + GFF6899 0.67 -0.5 34,476 - GFF6899 0.67 -0.7 34,476 - GFF6899 0.67 -0.7 34,559 + GFF6899 0.71 +1.2 34,559 + GFF6899 0.71 -2.4 34,559 + GFF6899 0.71 -0.0 34,559 + GFF6899 0.71 -0.1 34,560 - GFF6899 0.71 -0.1 34,560 - GFF6899 0.71 +0.0 34,560 - GFF6899 0.71 +0.1 34,560 - GFF6899 0.71 +0.3 34,560 - GFF6899 0.71 -0.6 34,560 - GFF6899 0.71 -0.3 34,560 - GFF6899 0.71 +0.3 34,560 - GFF6899 0.71 +0.4 34,560 - GFF6899 0.71 -0.0 34,560 - GFF6899 0.71 +0.0 34,646 + GFF6899 0.75 -1.3 34,647 - GFF6899 0.75 +1.2 34,724 + GFF6899 0.79 +1.9 34,724 + GFF6899 0.79 +0.5 34,725 - GFF6899 0.79 -0.7 34,725 - GFF6899 0.79 +1.3 34,725 - GFF6899 0.79 -0.3 34,775 + GFF6899 0.81 -0.5 34,775 + GFF6899 0.81 +0.9 34,775 + GFF6899 0.81 -0.9 34,775 + GFF6899 0.81 +0.2 34,776 - GFF6899 0.81 -0.6 34,776 - GFF6899 0.81 +0.7 34,776 - GFF6899 0.81 +0.6 34,776 - GFF6899 0.81 -1.4 34,776 - GFF6899 0.81 +0.3 34,776 - GFF6899 0.81 +0.8 34,796 + GFF6899 0.82 +0.8 34,796 + GFF6899 0.82 -0.2 34,796 + GFF6899 0.82 +0.3 34,802 + GFF6899 0.83 -0.2 34,802 + GFF6899 0.83 +2.2 34,802 + GFF6899 0.83 -1.2 34,802 + GFF6899 0.83 +1.9 34,802 + GFF6899 0.83 -0.4 34,803 - GFF6899 0.83 -0.3 35,021 + +0.2 35,022 - +0.0 35,022 - -0.0 35,024 + -0.2 35,024 + -1.3 35,024 + +0.3 35,024 + +0.9 35,025 - -0.7 35,218 + +0.5 35,218 + +0.8 35,218 + +0.2 35,218 + +0.5 35,218 + -0.7 35,218 + +0.5 35,218 + +0.2 35,219 - +0.2 35,219 - -0.4 35,219 - -0.6 35,219 - -1.5 35,219 - -0.7 35,219 - +1.9 35,219 - +0.6 35,219 - -0.3 35,222 - -0.5 35,239 + -0.2 35,239 + +1.5 35,239 + -0.0 35,239 + -2.3 35,239 + -0.1 35,239 + -1.0 35,239 + -0.7 35,239 + -1.4 35,239 + -0.9 35,239 + +0.0 35,239 + -0.0 35,240 - +0.0 35,240 - -0.1 35,240 - -0.6 35,240 - -0.9 35,240 - +0.3 35,240 - +0.0 35,240 - +0.0 35,240 - -0.4 35,240 - +0.9 35,240 - +0.3 35,240 - +0.1 35,240 - -0.3 35,240 - -0.1 35,240 - -0.3 35,240 - +0.8 35,240 - -1.4 35,240 - -0.1 35,422 + GFF6900 0.21 +1.2 35,422 + GFF6900 0.21 +0.7 35,422 + GFF6900 0.21 +0.5 35,422 + GFF6900 0.21 +0.1 35,422 + GFF6900 0.21 -0.0 35,422 + GFF6900 0.21 -2.1 35,423 - GFF6900 0.21 -1.5 35,423 - GFF6900 0.21 +0.7 35,423 - GFF6900 0.21 -0.5 35,423 - GFF6900 0.21 -1.3 35,423 - GFF6900 0.21 +0.2 35,423 - GFF6900 0.21 +1.9 35,423 - GFF6900 0.21 +0.1 35,494 + GFF6900 0.26 -1.9 35,494 + GFF6900 0.26 +0.1 35,494 + GFF6900 0.26 -1.5 35,495 - GFF6900 0.26 -1.8 35,495 - GFF6900 0.26 +0.3 35,581 + GFF6900 0.33 +0.1 35,581 + GFF6900 0.33 +0.5 35,581 + GFF6900 0.33 -0.0 35,581 + GFF6900 0.33 -0.2 35,581 + GFF6900 0.33 -0.4 35,582 - GFF6900 0.33 +1.2 35,582 - GFF6900 0.33 +0.2 35,582 - GFF6900 0.33 -0.1 35,582 - GFF6900 0.33 -0.5 35,582 - GFF6900 0.33 +0.7 35,582 - GFF6900 0.33 +0.1 36,076 + GFF6900 0.72 -0.0 36,076 + GFF6900 0.72 +1.3 36,076 + GFF6900 0.72 +0.9 36,076 + GFF6900 0.72 -0.0 36,076 + GFF6900 0.72 -1.4 36,076 + GFF6900 0.72 -0.4 36,076 + GFF6900 0.72 -0.3 36,077 - GFF6900 0.72 +1.7 36,077 - GFF6900 0.72 -0.5 36,077 - GFF6900 0.72 +0.3 36,077 - GFF6900 0.72 -1.4 36,085 + GFF6900 0.73 +0.3 36,085 + GFF6900 0.73 +0.5 36,085 + GFF6900 0.73 +0.2 36,085 + GFF6900 0.73 -0.2 36,085 + GFF6900 0.73 -0.9 36,085 + GFF6900 0.73 +0.1 36,085 + GFF6900 0.73 +0.6 36,085 + GFF6900 0.73 -0.7 36,085 + GFF6900 0.73 +0.9 36,085 + GFF6900 0.73 -0.0 36,086 - GFF6900 0.73 +0.1 36,086 - GFF6900 0.73 -0.2 36,086 - GFF6900 0.73 -0.2 36,110 - GFF6900 0.74 -0.9 36,110 - GFF6900 0.74 +0.7 36,265 + GFF6900 0.87 -0.1 36,266 - GFF6900 0.87 -0.3 36,266 - GFF6900 0.87 +2.9 36,286 + GFF6900 0.88 -1.3 36,286 + GFF6900 0.88 -0.0 36,287 - GFF6900 0.88 -0.0 36,287 - GFF6900 0.88 -0.2 36,371 + +0.8 36,371 + -0.3 36,371 + -0.9 36,371 + +0.8 36,371 + -0.2 36,371 + +0.1 36,372 - -0.9 36,605 + GFF6901 0.31 -0.2 36,605 + GFF6901 0.31 +1.1 36,605 + GFF6901 0.31 +0.2 36,605 + GFF6901 0.31 +0.3 36,605 + GFF6901 0.31 -1.3 36,605 + GFF6901 0.31 +1.0 36,605 + GFF6901 0.31 +0.7 36,605 + GFF6901 0.31 -0.1 36,605 + GFF6901 0.31 -2.3 36,605 + GFF6901 0.31 -1.0 36,605 + GFF6901 0.31 -0.2 36,605 + GFF6901 0.31 +1.0 36,606 - GFF6901 0.31 -0.9 36,606 - GFF6901 0.31 +0.6 36,606 - GFF6901 0.31 -0.4 36,606 - GFF6901 0.31 -0.2 36,606 - GFF6901 0.31 +0.5 36,606 - GFF6901 0.31 -0.0 36,606 - GFF6901 0.31 -0.6 36,680 + GFF6901 0.44 -0.6 36,680 + GFF6901 0.44 -0.4 36,680 + GFF6901 0.44 +0.8 36,681 - GFF6901 0.44 -0.1 36,681 - GFF6901 0.44 -0.2 36,731 + GFF6901 0.52 -1.1 36,731 + GFF6901 0.52 +0.3 36,731 + GFF6901 0.52 +0.6 36,731 + GFF6901 0.52 -0.1 36,732 - GFF6901 0.52 -0.5 36,854 + GFF6901 0.73 +0.3 36,854 + GFF6901 0.73 -0.4 36,855 - GFF6901 0.74 -1.5 36,855 - GFF6901 0.74 -0.1 36,855 - GFF6901 0.74 -0.1 36,855 - GFF6901 0.74 +1.9 36,855 - GFF6901 0.74 -1.1 36,855 - GFF6901 0.74 -1.7 37,146 + -1.1 37,146 + -0.6 37,146 + -2.4 37,146 + -0.2 37,146 + -0.8 37,146 + +0.5 37,147 - -0.4 37,147 - -0.2 37,147 - -0.5 37,147 - -0.8 37,147 - +0.1 37,147 - +0.2
Or see this region's nucleotide sequence