Strain Fitness in Variovorax sp. SCN45 around GFF6825

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
10,248	+		GFF6824	0.75	-0.3
10,248	+		GFF6824	0.75	+0.5
10,249	-		GFF6824	0.75	-0.9
10,376	+		GFF6824	0.89	-0.2
10,377	-		GFF6824	0.89	-0.4
10,931	-		GFF6825	0.37	-0.6
10,990	+		GFF6825	0.42	-0.2
10,991	-		GFF6825	0.42	+1.0
10,991	-		GFF6825	0.42	-0.2
10,991	-		GFF6825	0.42	-0.2
11,272	+		GFF6825	0.65	+0.4
11,272	+		GFF6825	0.65	+0.1
11,272	+		GFF6825	0.65	-0.6
11,272	+		GFF6825	0.65	-0.0
11,272	+		GFF6825	0.65	-0.7
11,273	-		GFF6825	0.65	+0.0
11,273	-		GFF6825	0.65	+0.8
11,273	-		GFF6825	0.65	-0.7
11,622	+				-1.6
11,622	+				+1.1
11,623	-				+0.6
11,717	+				-0.3
11,723	+				-1.2
11,725	+				-0.9
11,725	+				-0.4
11,726	-				+0.1
11,726	-				+1.2
11,726	-				-0.4
11,734	+				+0.7
12,439	+		GFF6826	0.75	-0.3
12,439	+		GFF6826	0.75	-0.6
12,440	-		GFF6826	0.75	+1.1
12,644	-				-0.6