Strain Fitness in Variovorax sp. SCN45 around GFF6823

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
7,653	+		GFF6821	0.48	-0.4
7,653	+		GFF6821	0.48	+1.0
7,653	+		GFF6821	0.48	-0.5
7,653	+		GFF6821	0.48	-0.5
7,653	+		GFF6821	0.48	-0.3
7,653	+		GFF6821	0.48	-1.2
7,654	-		GFF6821	0.49	-0.1
7,654	-		GFF6821	0.49	-0.1
7,654	-		GFF6821	0.49	-0.0
7,845	+		GFF6821	0.89	-0.2
7,845	+		GFF6821	0.89	-1.1
7,845	+		GFF6821	0.89	-0.9
7,845	+		GFF6821	0.89	+0.4
7,845	+		GFF6821	0.89	-0.9
7,845	+		GFF6821	0.89	-0.4
7,846	-		GFF6821	0.89	-0.2
7,846	-		GFF6821	0.89	+0.2
7,846	-		GFF6821	0.89	-0.4
7,846	-		GFF6821	0.89	-0.2
7,846	-		GFF6821	0.89	+0.8
7,846	-		GFF6821	0.89	+2.0
7,846	-		GFF6821	0.89	-0.4
7,846	-		GFF6821	0.89	-0.5
8,040	+		GFF6822	0.24	-2.3
8,040	+		GFF6822	0.24	-1.4
8,041	-		GFF6822	0.24	-0.9
8,041	-		GFF6822	0.24	-0.7
8,041	-		GFF6822	0.24	-1.3
8,041	-		GFF6822	0.24	-0.2
8,043	+		GFF6822	0.25	-0.7
8,044	-		GFF6822	0.25	-0.1
8,044	-		GFF6822	0.25	-0.6
8,052	+		GFF6822	0.26	-0.8
8,052	+		GFF6822	0.26	-0.2
8,052	+		GFF6822	0.26	+1.1
8,053	-		GFF6822	0.27	-1.8
8,053	-		GFF6822	0.27	+0.2
8,053	-		GFF6822	0.27	-0.3
8,053	-		GFF6822	0.27	-0.3
8,053	-		GFF6822	0.27	+1.4
8,053	-		GFF6822	0.27	-0.0
8,056	-		GFF6822	0.27	-0.4
8,217	+		GFF6822	0.61	-1.1
8,307	+		GFF6822	0.80	+0.3
8,307	+		GFF6822	0.80	-0.1
8,307	+		GFF6822	0.80	-1.8
8,308	-		GFF6822	0.80	-0.2
8,308	-		GFF6822	0.80	-0.2
8,308	-		GFF6822	0.80	-0.1
8,389	-				-0.4
8,442	+				+0.2
8,442	+				-0.9
8,442	+				-0.3
8,442	+				+0.2
8,443	-				-0.2
8,443	-				-1.2
8,621	-		GFF6823	0.12	-0.3
8,707	+		GFF6823	0.21	-0.9
8,707	+		GFF6823	0.21	+0.4
8,707	+		GFF6823	0.21	-0.3
8,722	+		GFF6823	0.23	+1.4
8,722	+		GFF6823	0.23	-0.2
8,723	-		GFF6823	0.23	+0.5
8,723	-		GFF6823	0.23	+0.6
8,723	-		GFF6823	0.23	+0.1
8,734	+		GFF6823	0.24	+0.6
8,920	+		GFF6823	0.43	-0.1
9,139	+		GFF6823	0.65	+0.6
9,139	+		GFF6823	0.65	+0.0
9,140	-		GFF6823	0.65	-0.4
9,206	-		GFF6823	0.72	+0.2
9,232	+		GFF6823	0.75	+0.4
9,232	+		GFF6823	0.75	-1.1
9,233	-		GFF6823	0.75	+0.3
9,233	-		GFF6823	0.75	+0.2
9,233	-		GFF6823	0.75	-1.4
9,233	-		GFF6823	0.75	+0.1
9,292	+		GFF6823	0.81	+0.6
9,292	+		GFF6823	0.81	-0.1
9,292	+		GFF6823	0.81	-0.2
9,293	-		GFF6823	0.81	+1.4
9,293	-		GFF6823	0.81	+0.2
9,293	-		GFF6823	0.81	+0.6
10,248	+		GFF6824	0.75	-0.3
10,248	+		GFF6824	0.75	+0.5
10,249	-		GFF6824	0.75	-0.9
10,376	+		GFF6824	0.89	-0.2
10,377	-		GFF6824	0.89	-0.4