Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6810 and GFF6811 are separated by 119 nucleotides GFF6811 and GFF6812 are separated by 16 nucleotides GFF6812 and GFF6813 are separated by 81 nucleotides GFF6813 and GFF6814 are separated by 19 nucleotides
GFF6810 - no description, at 56,818 to 57,300
GFF6810
GFF6811 - hypothetical protein, at 57,420 to 57,941
GFF6811
GFF6812 - no description, at 57,958 to 59,622
GFF6812
GFF6813 - no description, at 59,704 to 59,955
GFF6813
GFF6814 - NADH dehydrogenase (EC 1.6.99.3), at 59,975 to 61,330
GFF6814
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.999 kb on + strand, within GFF6810 at 57.000 kb on - strand, within GFF6810 at 57.108 kb on - strand, within GFF6810 at 57.164 kb on + strand, within GFF6810 at 57.347 kb on + strand at 57.376 kb on + strand at 57.376 kb on + strand at 57.377 kb on - strand at 57.404 kb on + strand at 57.558 kb on + strand, within GFF6811 at 57.558 kb on + strand, within GFF6811 at 57.558 kb on + strand, within GFF6811 at 57.778 kb on - strand, within GFF6811 at 57.778 kb on - strand, within GFF6811 at 57.783 kb on + strand, within GFF6811 at 57.783 kb on + strand, within GFF6811 at 57.784 kb on - strand, within GFF6811 at 57.784 kb on - strand, within GFF6811 at 58.013 kb on + strand at 58.013 kb on + strand at 58.013 kb on + strand at 58.013 kb on + strand at 58.014 kb on - strand at 58.014 kb on - strand at 58.014 kb on - strand at 58.014 kb on - strand at 58.014 kb on - strand at 58.097 kb on + strand at 58.106 kb on + strand at 58.106 kb on + strand at 58.107 kb on - strand at 58.107 kb on - strand at 58.107 kb on - strand at 58.107 kb on - strand at 58.107 kb on - strand at 58.107 kb on - strand at 58.448 kb on + strand, within GFF6812 at 58.448 kb on + strand, within GFF6812 at 58.449 kb on - strand, within GFF6812 at 58.449 kb on - strand, within GFF6812 at 58.449 kb on - strand, within GFF6812 at 58.987 kb on + strand, within GFF6812 at 58.987 kb on + strand, within GFF6812 at 58.987 kb on + strand, within GFF6812 at 58.987 kb on + strand, within GFF6812 at 58.987 kb on + strand, within GFF6812 at 58.987 kb on + strand, within GFF6812 at 58.987 kb on + strand, within GFF6812 at 58.988 kb on - strand, within GFF6812 at 58.988 kb on - strand, within GFF6812 at 58.988 kb on - strand, within GFF6812 at 58.988 kb on - strand, within GFF6812 at 59.048 kb on + strand, within GFF6812 at 59.048 kb on + strand, within GFF6812 at 59.060 kb on + strand, within GFF6812 at 59.060 kb on - strand, within GFF6812 at 59.132 kb on + strand, within GFF6812 at 59.255 kb on + strand, within GFF6812 at 59.255 kb on + strand, within GFF6812 at 59.255 kb on + strand, within GFF6812 at 59.256 kb on - strand, within GFF6812 at 59.275 kb on + strand, within GFF6812 at 59.405 kb on + strand, within GFF6812 at 59.405 kb on + strand, within GFF6812 at 59.405 kb on + strand, within GFF6812 at 59.405 kb on + strand, within GFF6812 at 59.405 kb on + strand, within GFF6812 at 59.406 kb on - strand, within GFF6812 at 59.406 kb on - strand, within GFF6812 at 59.406 kb on - strand, within GFF6812 at 59.406 kb on - strand, within GFF6812 at 59.421 kb on - strand, within GFF6812 at 59.421 kb on - strand, within GFF6812 at 59.873 kb on + strand, within GFF6813 at 59.873 kb on + strand, within GFF6813 at 59.873 kb on + strand, within GFF6813 at 59.874 kb on - strand, within GFF6813 at 59.874 kb on - strand, within GFF6813 at 60.036 kb on + strand at 60.037 kb on - strand at 60.093 kb on + strand at 60.094 kb on - strand at 60.094 kb on - strand at 60.219 kb on + strand, within GFF6814 at 60.517 kb on + strand, within GFF6814 at 60.528 kb on + strand, within GFF6814
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 56,999 + GFF6810 0.37 -0.7 57,000 - GFF6810 0.38 +0.0 57,108 - GFF6810 0.60 +1.2 57,164 + GFF6810 0.72 -0.3 57,347 + +0.1 57,376 + -2.4 57,376 + -0.3 57,377 - +0.6 57,404 + +0.3 57,558 + GFF6811 0.26 -0.1 57,558 + GFF6811 0.26 +1.6 57,558 + GFF6811 0.26 -0.4 57,778 - GFF6811 0.69 -0.3 57,778 - GFF6811 0.69 +0.9 57,783 + GFF6811 0.70 -0.4 57,783 + GFF6811 0.70 +0.0 57,784 - GFF6811 0.70 -0.5 57,784 - GFF6811 0.70 -0.2 58,013 + -0.3 58,013 + -0.4 58,013 + -1.9 58,013 + +0.7 58,014 - -0.1 58,014 - +0.5 58,014 - -0.5 58,014 - -0.3 58,014 - +0.0 58,097 + -1.0 58,106 + -1.6 58,106 + -0.2 58,107 - -0.1 58,107 - -0.0 58,107 - +0.8 58,107 - -1.2 58,107 - -0.9 58,107 - +2.6 58,448 + GFF6812 0.29 +0.1 58,448 + GFF6812 0.29 -1.0 58,449 - GFF6812 0.29 +0.2 58,449 - GFF6812 0.29 -1.7 58,449 - GFF6812 0.29 +1.2 58,987 + GFF6812 0.62 +1.2 58,987 + GFF6812 0.62 -0.2 58,987 + GFF6812 0.62 +0.9 58,987 + GFF6812 0.62 +0.0 58,987 + GFF6812 0.62 -1.6 58,987 + GFF6812 0.62 -0.4 58,987 + GFF6812 0.62 +0.7 58,988 - GFF6812 0.62 -0.4 58,988 - GFF6812 0.62 -0.4 58,988 - GFF6812 0.62 +0.1 58,988 - GFF6812 0.62 -1.1 59,048 + GFF6812 0.65 -0.4 59,048 + GFF6812 0.65 +0.5 59,060 + GFF6812 0.66 -0.1 59,060 - GFF6812 0.66 -1.4 59,132 + GFF6812 0.71 +0.7 59,255 + GFF6812 0.78 +0.8 59,255 + GFF6812 0.78 -1.2 59,255 + GFF6812 0.78 +0.8 59,256 - GFF6812 0.78 +1.1 59,275 + GFF6812 0.79 -0.6 59,405 + GFF6812 0.87 +1.3 59,405 + GFF6812 0.87 -0.6 59,405 + GFF6812 0.87 +0.8 59,405 + GFF6812 0.87 +0.4 59,405 + GFF6812 0.87 -0.1 59,406 - GFF6812 0.87 -1.1 59,406 - GFF6812 0.87 -0.4 59,406 - GFF6812 0.87 -0.3 59,406 - GFF6812 0.87 -0.1 59,421 - GFF6812 0.88 -0.9 59,421 - GFF6812 0.88 -0.0 59,873 + GFF6813 0.67 -1.4 59,873 + GFF6813 0.67 -0.3 59,873 + GFF6813 0.67 +0.0 59,874 - GFF6813 0.67 +0.3 59,874 - GFF6813 0.67 +1.1 60,036 + +0.3 60,037 - -0.5 60,093 + -0.3 60,094 - -0.7 60,094 - +0.0 60,219 + GFF6814 0.18 -0.9 60,517 + GFF6814 0.40 -0.6 60,528 + GFF6814 0.41 -0.2
Or see this region's nucleotide sequence