Strain Fitness in Variovorax sp. SCN45 around GFF6808

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6807 and GFF6808 are separated by 41 nucleotidesGFF6808 and GFF6809 are separated by 227 nucleotides GFF6807 - BUG/TctC family periplasmic protein, at 53,427 to 54,392 GFF6807 GFF6808 - Peroxiredoxin OsmC (EC 1.11.1.15), at 54,434 to 54,874 GFF6808 GFF6809 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 55,102 to 56,799 GFF6809 Position (kb) 54 55Strain fitness (log2 ratio) -1 0 1 2 3at 53.518 kb on + strandat 53.644 kb on + strand, within GFF6807at 53.645 kb on - strand, within GFF6807at 53.764 kb on + strand, within GFF6807at 53.764 kb on + strand, within GFF6807at 53.764 kb on + strand, within GFF6807at 53.765 kb on - strand, within GFF6807at 53.765 kb on - strand, within GFF6807at 53.765 kb on - strand, within GFF6807at 53.765 kb on - strand, within GFF6807at 53.765 kb on - strand, within GFF6807at 53.765 kb on - strand, within GFF6807at 53.785 kb on + strand, within GFF6807at 53.935 kb on + strand, within GFF6807at 53.935 kb on + strand, within GFF6807at 53.935 kb on + strand, within GFF6807at 53.935 kb on + strand, within GFF6807at 53.936 kb on - strand, within GFF6807at 53.936 kb on - strand, within GFF6807at 53.936 kb on - strand, within GFF6807at 54.073 kb on + strand, within GFF6807at 54.074 kb on - strand, within GFF6807at 54.074 kb on - strand, within GFF6807at 54.088 kb on + strand, within GFF6807at 54.089 kb on - strand, within GFF6807at 54.089 kb on - strand, within GFF6807at 54.139 kb on + strand, within GFF6807at 54.139 kb on + strand, within GFF6807at 54.139 kb on + strand, within GFF6807at 54.202 kb on + strand, within GFF6807at 54.202 kb on + strand, within GFF6807at 54.202 kb on + strand, within GFF6807at 54.203 kb on - strand, within GFF6807at 54.323 kb on - strandat 54.323 kb on - strandat 54.422 kb on + strandat 54.422 kb on + strandat 54.422 kb on + strandat 54.422 kb on + strandat 54.423 kb on - strandat 54.423 kb on - strandat 54.423 kb on - strandat 54.423 kb on - strandat 54.423 kb on - strandat 54.423 kb on - strandat 54.423 kb on - strandat 54.774 kb on + strand, within GFF6808at 54.780 kb on + strand, within GFF6808at 54.781 kb on - strand, within GFF6808at 54.893 kb on + strandat 54.921 kb on + strandat 54.922 kb on - strandat 54.948 kb on + strandat 54.949 kb on - strandat 54.949 kb on - strandat 54.998 kb on + strandat 55.048 kb on + strandat 55.120 kb on + strandat 55.120 kb on + strandat 55.120 kb on + strandat 55.121 kb on - strandat 55.121 kb on - strandat 55.121 kb on - strandat 55.121 kb on - strandat 55.121 kb on - strandat 55.121 kb on - strandat 55.252 kb on + strandat 55.253 kb on - strandat 55.444 kb on + strand, within GFF6809at 55.444 kb on + strand, within GFF6809at 55.444 kb on + strand, within GFF6809at 55.444 kb on + strand, within GFF6809at 55.444 kb on + strand, within GFF6809at 55.444 kb on + strand, within GFF6809at 55.444 kb on + strand, within GFF6809at 55.445 kb on - strand, within GFF6809at 55.445 kb on - strand, within GFF6809at 55.445 kb on - strand, within GFF6809at 55.445 kb on - strand, within GFF6809at 55.756 kb on + strand, within GFF6809at 55.757 kb on - strand, within GFF6809

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
53,518 + -0.5
53,644 + GFF6807 0.22 +0.0
53,645 - GFF6807 0.23 -0.2
53,764 + GFF6807 0.35 -0.8
53,764 + GFF6807 0.35 +0.2
53,764 + GFF6807 0.35 +0.1
53,765 - GFF6807 0.35 +1.6
53,765 - GFF6807 0.35 -0.3
53,765 - GFF6807 0.35 +0.6
53,765 - GFF6807 0.35 -0.7
53,765 - GFF6807 0.35 -0.6
53,765 - GFF6807 0.35 -1.2
53,785 + GFF6807 0.37 -0.7
53,935 + GFF6807 0.53 +0.2
53,935 + GFF6807 0.53 +1.1
53,935 + GFF6807 0.53 +1.6
53,935 + GFF6807 0.53 +0.3
53,936 - GFF6807 0.53 +1.5
53,936 - GFF6807 0.53 +1.1
53,936 - GFF6807 0.53 -0.3
54,073 + GFF6807 0.67 +1.2
54,074 - GFF6807 0.67 +0.9
54,074 - GFF6807 0.67 -0.6
54,088 + GFF6807 0.68 -0.4
54,089 - GFF6807 0.69 -0.7
54,089 - GFF6807 0.69 -1.2
54,139 + GFF6807 0.74 -0.7
54,139 + GFF6807 0.74 +2.0
54,139 + GFF6807 0.74 +0.9
54,202 + GFF6807 0.80 -0.2
54,202 + GFF6807 0.80 -0.0
54,202 + GFF6807 0.80 +0.0
54,203 - GFF6807 0.80 -1.6
54,323 - -0.1
54,323 - +0.2
54,422 + -0.8
54,422 + +3.0
54,422 + -0.1
54,422 + +1.0
54,423 - -1.0
54,423 - -0.1
54,423 - +1.2
54,423 - -0.7
54,423 - -0.4
54,423 - -0.4
54,423 - -0.8
54,774 + GFF6808 0.77 -0.6
54,780 + GFF6808 0.78 -0.5
54,781 - GFF6808 0.79 -0.6
54,893 + +1.9
54,921 + -0.4
54,922 - +0.5
54,948 + -1.1
54,949 - +0.2
54,949 - -0.7
54,998 + +0.3
55,048 + -0.1
55,120 + -1.7
55,120 + +2.3
55,120 + -0.7
55,121 - +0.2
55,121 - -0.2
55,121 - +0.3
55,121 - +0.1
55,121 - -1.3
55,121 - -0.2
55,252 + +0.4
55,253 - -0.6
55,444 + GFF6809 0.20 +0.2
55,444 + GFF6809 0.20 +0.0
55,444 + GFF6809 0.20 -0.4
55,444 + GFF6809 0.20 +0.1
55,444 + GFF6809 0.20 -1.0
55,444 + GFF6809 0.20 -0.9
55,444 + GFF6809 0.20 +0.4
55,445 - GFF6809 0.20 -1.3
55,445 - GFF6809 0.20 -1.3
55,445 - GFF6809 0.20 +1.1
55,445 - GFF6809 0.20 -1.5
55,756 + GFF6809 0.39 -0.4
55,757 - GFF6809 0.39 +0.4

Or see this region's nucleotide sequence