Strain Fitness in Variovorax sp. SCN45 around GFF6761

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
6,375	+				-0.7
6,375	+				-1.0
6,375	+				-0.2
6,375	+				-2.5
6,375	+				-2.7
6,376	-				-0.6
6,502	+				+1.3
6,502	+				+0.1
6,502	+				-1.1
6,503	-				+0.1
6,521	+				-0.2
6,521	+				-0.1
6,521	+				+0.3
6,521	+				+0.5
6,521	+				-1.6
6,522	-				-0.0
6,522	-				-0.6
6,522	-				+2.2
6,522	-				-0.4
6,522	-				-0.4
6,522	-				+0.1
6,522	-				-0.8
6,929	+		GFF6760	0.60	-0.4
6,929	+		GFF6760	0.60	+0.2
6,930	-		GFF6760	0.60	+1.1
6,930	-		GFF6760	0.60	+0.5
6,930	-		GFF6760	0.60	-1.0
6,930	-		GFF6760	0.60	-0.8
6,930	-		GFF6760	0.60	+1.0
6,949	+		GFF6760	0.62	+1.6
6,950	-		GFF6760	0.63	-0.1
7,321	+				-0.0
7,321	+				-0.4
7,321	+				-1.1
7,321	+				-0.2
7,321	+				-0.2
7,321	+				-0.1
7,321	+				-0.7
7,321	+				-0.2
7,322	-				+0.4
7,322	-				+0.5
7,322	-				-0.4
7,345	+				+0.4
7,402	-		GFF6761	0.12	+0.9
7,730	-		GFF6761	0.31	-0.9
7,936	+		GFF6761	0.44	+0.0
7,937	-		GFF6761	0.44	+2.0
8,173	+		GFF6761	0.58	+0.7
8,173	+		GFF6761	0.58	+0.4
8,173	+		GFF6761	0.58	+1.0
8,173	+		GFF6761	0.58	+0.5
8,173	+		GFF6761	0.58	-0.5
8,173	+		GFF6761	0.58	-0.1
8,173	+		GFF6761	0.58	-0.1
8,173	+		GFF6761	0.58	+0.4
8,173	+		GFF6761	0.58	+0.5
8,173	+		GFF6761	0.58	-0.1
8,174	-		GFF6761	0.58	+0.3
8,174	-		GFF6761	0.58	+2.0
8,389	+		GFF6761	0.71	-0.5
8,389	+		GFF6761	0.71	+0.3
8,389	+		GFF6761	0.71	+0.6
8,389	+		GFF6761	0.71	-0.2
8,389	+		GFF6761	0.71	+0.6
8,389	+		GFF6761	0.71	+0.3
8,389	+		GFF6761	0.71	-1.0
8,389	+		GFF6761	0.71	+0.5
8,389	+		GFF6761	0.71	+0.1
8,389	+		GFF6761	0.71	-0.3
8,389	+		GFF6761	0.71	+1.3
8,390	-		GFF6761	0.71	+0.9
8,390	-		GFF6761	0.71	+0.6
8,390	-		GFF6761	0.71	-0.8
8,390	-		GFF6761	0.71	-0.7
8,390	-		GFF6761	0.71	+0.3
8,390	-		GFF6761	0.71	-2.6
8,390	-		GFF6761	0.71	-0.8
8,390	-		GFF6761	0.71	+0.4
8,391	-		GFF6761	0.71	-0.2
8,395	+		GFF6761	0.71	-1.1
8,395	+		GFF6761	0.71	-0.4
8,395	+		GFF6761	0.71	+0.2
8,396	-		GFF6761	0.71	+0.0
8,396	-		GFF6761	0.71	-0.5
8,401	+		GFF6761	0.71	+0.9
8,401	+		GFF6761	0.71	+0.4
8,539	+		GFF6761	0.80	+0.2
8,557	+		GFF6761	0.81	-0.3
8,557	+		GFF6761	0.81	+1.1
8,557	+		GFF6761	0.81	+0.0
8,557	+		GFF6761	0.81	-0.5
8,557	+		GFF6761	0.81	-0.2
8,557	+		GFF6761	0.81	-0.3
8,557	+		GFF6761	0.81	-0.7
8,557	+		GFF6761	0.81	-1.1
8,557	+		GFF6761	0.81	+0.2
8,557	+		GFF6761	0.81	-0.1
8,557	+		GFF6761	0.81	-0.5
8,558	-		GFF6761	0.81	+0.4
8,558	-		GFF6761	0.81	-0.6
8,558	-		GFF6761	0.81	-1.0
8,558	-		GFF6761	0.81	-0.7
8,558	-		GFF6761	0.81	-0.4
8,558	-		GFF6761	0.81	-0.5
8,558	-		GFF6761	0.81	-0.5
8,558	-		GFF6761	0.81	-2.0
8,558	-		GFF6761	0.81	+0.2
8,558	-		GFF6761	0.81	-0.5
8,558	-		GFF6761	0.81	-0.2
8,558	-		GFF6761	0.81	+0.0
8,558	-		GFF6761	0.81	+0.1
9,026	+				-1.9
9,026	+				-2.1
9,027	-				-1.0
9,075	-				-0.8
9,075	-				-0.6
9,176	+		GFF6762	0.14	-0.9
9,176	+		GFF6762	0.14	-0.3
9,176	+		GFF6762	0.14	-0.3
9,176	+		GFF6762	0.14	-0.3
9,176	+		GFF6762	0.14	-0.4
9,176	+		GFF6762	0.14	-0.4
9,177	-		GFF6762	0.14	-0.1
9,177	-		GFF6762	0.14	-0.3
9,177	-		GFF6762	0.14	+0.6
9,191	+		GFF6762	0.16	+0.4
9,191	+		GFF6762	0.16	-0.3
9,401	+		GFF6762	0.35	+0.1
9,401	+		GFF6762	0.35	+0.4
9,401	+		GFF6762	0.35	-0.7
9,401	+		GFF6762	0.35	-1.6
9,402	-		GFF6762	0.35	-0.1
9,402	-		GFF6762	0.35	-0.2
9,402	-		GFF6762	0.35	+0.7
9,402	-		GFF6762	0.35	-0.6
9,402	-		GFF6762	0.35	-0.5
9,402	-		GFF6762	0.35	+0.6
9,402	-		GFF6762	0.35	+0.3
9,402	-		GFF6762	0.35	+0.9
9,404	+		GFF6762	0.36	-0.1
9,404	+		GFF6762	0.36	+0.3
9,404	+		GFF6762	0.36	-0.5
9,404	+		GFF6762	0.36	+0.2
9,405	-		GFF6762	0.36	-2.6
9,405	-		GFF6762	0.36	-1.4
9,572	+		GFF6762	0.52	-0.1
9,572	+		GFF6762	0.52	-1.0
9,572	+		GFF6762	0.52	+0.4
9,572	+		GFF6762	0.52	+1.6
9,573	-		GFF6762	0.52	+2.3
9,573	-		GFF6762	0.52	+0.8
9,573	-		GFF6762	0.52	-0.7
9,611	+		GFF6762	0.55	-0.3
9,611	+		GFF6762	0.55	-2.6
9,611	+		GFF6762	0.55	-0.7
9,611	+		GFF6762	0.55	+0.1
9,611	+		GFF6762	0.55	-0.3
9,611	+		GFF6762	0.55	+0.6
9,611	+		GFF6762	0.55	+0.6
9,612	-		GFF6762	0.55	-0.4
9,612	-		GFF6762	0.55	-0.2
9,612	-		GFF6762	0.55	-0.2
9,612	-		GFF6762	0.55	-0.6
9,612	-		GFF6762	0.55	-0.2
9,612	-		GFF6762	0.55	+0.8
9,612	-		GFF6762	0.55	-0.5
9,612	-		GFF6762	0.55	-0.4
9,612	-		GFF6762	0.55	+0.9
9,612	-		GFF6762	0.55	+0.1
9,612	-		GFF6762	0.55	+0.2
9,636	-		GFF6762	0.58	-0.2