Strain Fitness in Variovorax sp. SCN45 around GFF6720

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6718 and GFF6719 are separated by 7 nucleotidesGFF6719 and GFF6720 are separated by 15 nucleotidesGFF6720 and GFF6721 overlap by 4 nucleotides GFF6718 - no description, at 28,499 to 28,918 GFF6718 GFF6719 - hypothetical protein, at 28,926 to 29,489 GFF6719 GFF6720 - no description, at 29,505 to 30,554 GFF6720 GFF6721 - Transcriptional regulator, LysR family, at 30,551 to 31,486 GFF6721 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 28.575 kb on - strand, within GFF6718at 28.609 kb on + strand, within GFF6718at 28.839 kb on - strand, within GFF6718at 29.070 kb on - strand, within GFF6719at 29.079 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.220 kb on + strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.334 kb on + strand, within GFF6719at 29.335 kb on - strand, within GFF6719at 29.335 kb on - strand, within GFF6719at 29.369 kb on + strand, within GFF6719at 29.370 kb on - strand, within GFF6719at 29.700 kb on + strand, within GFF6720at 29.701 kb on - strand, within GFF6720at 29.703 kb on + strand, within GFF6720at 29.919 kb on + strand, within GFF6720at 29.919 kb on + strand, within GFF6720at 29.920 kb on - strand, within GFF6720at 29.920 kb on - strand, within GFF6720at 29.920 kb on - strand, within GFF6720at 30.021 kb on + strand, within GFF6720at 30.021 kb on + strand, within GFF6720at 30.021 kb on + strand, within GFF6720at 30.022 kb on - strand, within GFF6720at 30.175 kb on - strand, within GFF6720at 30.175 kb on - strand, within GFF6720at 30.175 kb on - strand, within GFF6720at 30.175 kb on - strand, within GFF6720at 30.175 kb on - strand, within GFF6720at 30.302 kb on - strand, within GFF6720at 30.302 kb on - strand, within GFF6720at 30.690 kb on + strand, within GFF6721at 30.690 kb on + strand, within GFF6721at 30.690 kb on + strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.777 kb on + strand, within GFF6721at 30.777 kb on + strand, within GFF6721at 30.777 kb on + strand, within GFF6721at 30.778 kb on - strand, within GFF6721at 30.882 kb on + strand, within GFF6721at 30.882 kb on + strand, within GFF6721at 31.130 kb on + strand, within GFF6721at 31.131 kb on - strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.459 kb on - strandat 31.518 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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28,575 - GFF6718 0.18 -0.4
28,609 + GFF6718 0.26 +0.1
28,839 - GFF6718 0.81 +0.6
29,070 - GFF6719 0.26 +0.2
29,079 + GFF6719 0.27 +0.8
29,169 + GFF6719 0.43 -1.4
29,169 + GFF6719 0.43 -0.8
29,169 + GFF6719 0.43 -0.7
29,169 + GFF6719 0.43 +0.4
29,169 + GFF6719 0.43 +1.8
29,170 - GFF6719 0.43 +0.1
29,170 - GFF6719 0.43 -0.4
29,170 - GFF6719 0.43 -0.3
29,170 - GFF6719 0.43 +0.1
29,170 - GFF6719 0.43 -0.1
29,170 - GFF6719 0.43 -0.3
29,170 - GFF6719 0.43 -0.0
29,170 - GFF6719 0.43 -1.6
29,220 + GFF6719 0.52 -0.5
29,221 - GFF6719 0.52 +1.1
29,221 - GFF6719 0.52 +0.2
29,221 - GFF6719 0.52 +0.1
29,221 - GFF6719 0.52 +0.0
29,221 - GFF6719 0.52 +2.0
29,334 + GFF6719 0.72 -0.2
29,335 - GFF6719 0.73 -0.8
29,335 - GFF6719 0.73 -0.5
29,369 + GFF6719 0.79 +0.1
29,370 - GFF6719 0.79 -0.5
29,700 + GFF6720 0.19 +0.6
29,701 - GFF6720 0.19 -0.8
29,703 + GFF6720 0.19 +0.7
29,919 + GFF6720 0.39 -0.1
29,919 + GFF6720 0.39 -0.3
29,920 - GFF6720 0.40 -0.6
29,920 - GFF6720 0.40 +0.1
29,920 - GFF6720 0.40 +0.1
30,021 + GFF6720 0.49 -1.6
30,021 + GFF6720 0.49 -0.7
30,021 + GFF6720 0.49 +0.8
30,022 - GFF6720 0.49 +0.1
30,175 - GFF6720 0.64 -0.1
30,175 - GFF6720 0.64 +1.0
30,175 - GFF6720 0.64 +0.6
30,175 - GFF6720 0.64 -0.2
30,175 - GFF6720 0.64 +0.2
30,302 - GFF6720 0.76 +0.1
30,302 - GFF6720 0.76 +1.1
30,690 + GFF6721 0.15 +0.6
30,690 + GFF6721 0.15 -0.6
30,690 + GFF6721 0.15 -0.6
30,691 - GFF6721 0.15 -0.6
30,691 - GFF6721 0.15 +0.1
30,691 - GFF6721 0.15 +0.4
30,691 - GFF6721 0.15 -0.8
30,691 - GFF6721 0.15 -2.1
30,777 + GFF6721 0.24 -0.7
30,777 + GFF6721 0.24 +0.2
30,777 + GFF6721 0.24 +0.1
30,778 - GFF6721 0.24 -0.3
30,882 + GFF6721 0.35 -1.2
30,882 + GFF6721 0.35 +0.0
31,130 + GFF6721 0.62 +0.8
31,131 - GFF6721 0.62 -0.8
31,293 + GFF6721 0.79 -0.3
31,293 + GFF6721 0.79 -0.5
31,293 + GFF6721 0.79 -1.2
31,293 + GFF6721 0.79 -0.4
31,293 + GFF6721 0.79 -0.4
31,293 + GFF6721 0.79 -0.5
31,293 + GFF6721 0.79 -0.0
31,293 + GFF6721 0.79 -0.3
31,293 + GFF6721 0.79 +0.8
31,293 + GFF6721 0.79 +0.2
31,293 + GFF6721 0.79 -0.1
31,293 + GFF6721 0.79 -0.8
31,294 - GFF6721 0.79 +0.2
31,294 - GFF6721 0.79 -0.8
31,294 - GFF6721 0.79 -0.2
31,294 - GFF6721 0.79 -0.4
31,294 - GFF6721 0.79 -0.0
31,294 - GFF6721 0.79 +0.5
31,294 - GFF6721 0.79 -0.8
31,294 - GFF6721 0.79 -0.7
31,294 - GFF6721 0.79 +0.1
31,294 - GFF6721 0.79 -1.4
31,294 - GFF6721 0.79 +0.8
31,294 - GFF6721 0.79 +0.0
31,294 - GFF6721 0.79 -0.7
31,294 - GFF6721 0.79 -0.4
31,294 - GFF6721 0.79 -1.4
31,294 - GFF6721 0.79 -0.8
31,294 - GFF6721 0.79 +0.0
31,459 - -0.3
31,518 - +0.3

Or see this region's nucleotide sequence